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Natural scientist as Bioinformatician (m/f/d)
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Natural Scientist as Bioinformatician
Job summary
A leading German research institute in Braunschweig is seeking a Bioinformatician / Research Software Engineer to develop and maintain databases for genomic surveillance of emerging pathogens. The role involves working on the EnteroBase platform and requires a master's degree in a relevant field and proficiency in programming languages like Python and JavaScript. This full-time position offers the flexibility of mobile office work and opportunities for creativity in a scientific environment.
Benefits
Qualifications
- Master’s degree in a relevant field is required.
- Experience with Python and JavaScript is essential.
- Knowledge of web technologies and database management is needed.
Responsibilities
- Develop and maintain databases for pathogen genome sequences.
- Integrate databases with existing digital resources.
- Implement bioinformatics analysis pipelines.
Skills
Education
03/26
"Databases for genomic surveillance of emerging pathogens"
The Leibniz Institute DSMZ‑German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany, offers a position as a Bioinformatician / Research Software Engineer (m/f/d). The position is funded by the German Center for Infection Research (DZIF) and is part of the DZIF infrastructure Bioresources, Biodata and Digital Health (https://www.dzif.de/en/infrastructures). The appointment will be initially for 3 years and subject to extension based on a positive interim evaluation. The salary‑level will be up to TV‑L 13, according to personal qualification. The position is offered full time and is not appropriate for part‑time work. Starting date will be as soon as possible.
We develop databases for pathogen genome sequences and associated metadata to support microbiologists, clinicians and epidemiologists with access to data and standardized analytical services. Your tasks will include the development and maintenance of databases based on the EnteroBase platform (https://enterobase.dsmz.de/), their integration with other databases (e.g. DSMZ Digital Diversity resources, European Nucleotide Archive) and the implementation of pipelines for bioinformatics analysis (e.g. for long‑read sequencing data). The job requires close interaction with collaboration partners, both national and international.
- Master’s degree in computer science, natural sciences or information sciences
- Experience in working with object‑oriented programming languages (preferably Python and JavaScript)
- Experience in web and database development, knowledge of HTML5, CSS3 and PHP
- Knowledge of version control systems (Bitbucket) and bug trackers
- A good command of English
- Experience with Linux shell‑based bioinformatics tools and genome data will be a plus
- Interest in interdisciplinary work
- Direct involvement in the (re)design of databases
- Plenty of room for creativity & challenging topics
- Access to in‑house high‑performance computing clusters (2,464 CPUs, 18 TB RAM)
- An interdisciplinary working environment with frequent exchange of experiences
- A motivated team and a pleasant working atmosphere in a scientific environment
- Education and training
- Mobile office work is possible for up to three days per week
- A company certified according to audit berufundfamilie, therefore flexible possibilities to combine work and family life
The DSMZ strives to increase the proportion of female scientists and encourage female candidates specifically to apply. Disabled applicants with identical technical and personal qualification will be preferentially selected. In the case of degrees obtained abroad, proof of equivalence with a German degree must be enclosed. For further information, please refer to the website of the Central Office for Foreign Education (ZAB).
The DSMZ Is An Equal Opportunity Employer, Supports Balanced Work‑life Career Development, And Holds The Certificate Of The Audit Berufundfamilie®.
* The salary benchmark is based on the target salaries of market leaders in their relevant sectors. It is intended to serve as a guide to help Premium Members assess open positions and to help in salary negotiations. The salary benchmark is not provided directly by the company, which could be significantly higher or lower.