Data Engineer

Karlstad University; Hinxton; Hybrid; GBP 35,000 - 50,000; Full time

Job summary

A prestigious educational institution in Hinxton is seeking a passionate Data Engineer to contribute to the COSMIC project focused on cancer genomics. This role involves developing automated pipelines and workflows, implementing cloud solutions, and supporting the management and release of vast genomic datasets. Candidates should possess a degree in Computer Science or Bioinformatics, and experience in languages like Python and SQL. The position offers a collaborative environment with the opportunity to influence the future of cancer research.

Benefits

Hybrid working arrangement

Supportive team culture

Training and development opportunities

Qualifications

• Experience in developing software and analytical tools across large datasets.
• Strong understanding of data handling and creating/maintaining data processing pipelines.
• Experience with modern coding practices: Git, Agile.

Responsibilities

• Develop new automated pipelines for data curation and release of COSMIC products.
• Implement tools and processes in a cloud environment.
• Collaborate with a multidisciplinary team to improve genomic data handling.

Skills

Python

PERL

SQL

Bash or Shell

Git

Agile

Education

Degree in Computer Science or Bioinformatics

Tools

Postgres

Oracle

Job description

Do you want to help us improve human health and understand life on Earth? Make your mark by shaping the future to enable or deliver life-changing science to solve some of humanity’s greatest challenges.

We are seeking to recruit a passionate Data Engineer to help us develop the solutions for the world’s key cancer genomics resource, in COSMIC (Catalogue of Somatic Mutations of Cancer). We invite individuals with backgrounds in computer science or bioinformatics to join us in this exciting opportunity to contribute to the field of cancer genomics. You will be directly involved with exciting projects, implement tools and processes in the cloud environment, to support the world’s key cancer genomics resource, COSMIC (Catalogue of Somatic Mutations of Cancer)

About the Role:

This role is needed to enable the rapid growth and evolution of COSMIC’s large-scale biological datasets and products, helping to advance cancer research globally and ultimately improve outcomes for patients.

Data is currently gathered from a variety of sources, from manual curation to structured repositories, and standardised into the COSMIC database before release via our analytic website. This genetic and genomic data is increasing in quantity and scope, its value is enhanced by analytic highlights, and this position will improve the handling, annotation, meaningful presentation and user access of this information. More specifically in this role, we provide excellent opportunities to apply best practices in software development, writing clean code, and taking a test‑driven development approach.

About You:

You will support the development of new automated pipelines and workflows for data curation and release of COSMIC products. Participate in developing solutions for the storage and production pipeline of vast genomic data in the cloud environment.

While a background in biology or genomics is beneficial, it is not essential. We value candidates who are eager to learn and engage with a wide range of cancer genomics datasets. The role involves maintaining and supporting automated pipelines and workflows on cloud platforms.

You must be a good communicator and able to understand the goals and aims of the collaborative COSMIC team and its customers of researchers, scientists and clinicians, globally. You will have experience in developing software and analytical tools across large datasets, ensuring throughput and quality.

You will contribute in bringing new perspectives on options for storage, pipelining and visualisation. You will possess a degree in Computer Science or Bioinformatics, and demonstrate expertise in a modern programming language such as Python and (Postgres/Oracle) SQL, within a Unix/Linux environment.

This position would be well‑suited for someone with experience in software development. You will join a multidisciplinary, committed and supportive team with the opportunity to work in conjunction with software developers, bioinformaticians, curators and scientists as well as colleagues and collaborators both in Sanger and externally.

Essential Technical Skills:

• Degree or equivalent experience in Software development/Computer Science or Bioinformatics
• Proven experience in at least one modern programming language, preferably Python or PERL
• Proven experience in one or more scripting languages preferably Bash or Shell
• Expertise across large and complex relational databases,proficient in SQL
• An understanding of FAIR (findability, accessibility, interoperability, and reusability) data
• Experience in Data handling skills
• Experience or willingness to learn how to create/maintain data processing pipelines
• Experience with modern coding practices: Git, Agile
• Knowledge or experience in data warehousing architecture and concepts (ETL and ELT) and data modelling
• Experience or willingness to learn development best practices in DevOps, Containers, CI/CD, and TDD

Competencies and Behaviours:

• Enthusiasm, commitment and attention to detail
• Ability to prioritise activities and manage the own workload independently
• Ability to explain technical issues effectively and understandably to non‑technical users
• Ability to work collaboratively with a range of stakeholders at all levels
• Ability to understand scientific and technical challenges
• Shows curiosity and a willingness to learn new technologies, tools, and ways of working
• Adjusts to changing requirements, priorities, or technical approaches
• Welcomes feedback from peers and seniors
• Collaborates effectively with team members and contributes to shared goals

About Us:

COSMIC is the key information source in global human cancer research and is growing rapidly in content, scope, and value. We exist to speed up the field of precision oncology so that every cancer journey can be tailored, accurate, and precise. We do this by streamlining and simplifying genomics data analysis for better prevention, diagnosis, and treatment research.

Please apply by submitting your CV and a supporting Cover letter. Your cover letter should clearly cover the following three areas:

1. Your background and previous related experience

2. Your relevant skills and how they align with the role

3. Your motivation for applying for this position

Applications without a cover letter addressing all three points will not be considered

Informatician/ Data Scientist job family:

Grade 3

Contract Type:

Permanent

Recruitment Process:

Shortlisting w/c 9th Feb, Interviews w/c 16th February or w/c 2nd March

Closing date:

8th February 2026

We recognise that there are many benefits to Hybrid Working; including an improved work‑life balance, with more focused time, as well as the ability to organise working time so that collaborative opportunities and team discussions are facilitated on campus. The hybrid working arrangement will vary for different roles and teams. The nature of your role and the type of work you do will determine if a hybrid working arrangement is possible.

Equality, Diversity and Inclusion:

We aim to attract, recruit, retain and develop talent from the widest possible talent pool, thereby gaining insight and access to different markets to generate a greater impact on the world. We have a supportive culture with the following staff networks, LGBTQ+, Parents and Carers, Disability and Race Equity to bring people together to share experiences, offer specific support and development opportunities and raise awareness. The networks are also a place for allies to provide support to others.

We want our people to be whoever they want to be because we believe people who bring their best selves to work, do their best work. That’s why we’re committed to creating a truly inclusive culture at Sanger Institute. We will consider all individuals without discrimination and are committed to creating an inclusive environment for all employees, where everyone can thrive.

We are proud to deliver an awarding campus‑wide employee wellbeing strategy and programme. The importance of good health and adopting a healthier lifestyle and the commitment to reduce work‑related stress is strongly acknowledged and recognised at Sanger Institute.

Sanger Institute became a signatory of the International Technician Commitment initiative In March 2018. The Technician Commitment aims to empower and ensure visibility, recognition, career development and sustainability for technicians working in higher education and research, across all disciplines.

Every year the Wellcome Sanger Institute supports the visits of dozens of overseas researchers from across the globe to the Genome campus to collaborate, share insights and to undertake ground‑breaking scientific research. Our reliable in‑house service provides expert advice and guidance to support current and prospective staff, and visitors at various points of their journey. We are able to provide guidance through your entire journey, from initial visa application through to extensions and applications of Indefinite Leave to Remain, the service is proud to support your personal applications and those of your dependants and family members.

Global Mobility and Immigration Service (16 kB)

Wellcome Trust Genome Campus, Hinxton Saffron Walden, United Kingdom

Published

2026-01-27

2026-02-08 23:59 (Europe/London)
2026-02-09 00:59 (CET)

We are a world‑leading genomics research institute. Our work helps improve human health and understand life on Earth.