Bioinformatics Engineer - Oncology & Hematology

SeqOne Inc.; France; Sur place; EUR 50 000 - 70 000; Plein temps

Avantages offerts par ce poste

Hybrid work options

Health insurance

Flexible hours

Training & conferences

Résumé du poste

SeqOne is seeking a Bioinformatics Engineer to design, build and operate production-grade bioinformatics applications and pipelines for oncology and hematology research. You will partner with research and product teams to translate scientific needs into reliable software, lead code quality efforts and help the team adopt best practices for scalable, reproducible analyses.

You will design and develop tools for complex data, collaborate with scientific teams, and contribute to publications while

Qualifications

• Master’s degree in Bioinformatics, CS or related field.
• 2+ years of experience in bioinformatics development.
• Strong Python, UNIX/Linux and Bash skills.
• Experience with workflow managers Snakemake/Nextflow.
• Familiarity with Git and Docker for reproducible environments.

Responsabilités

• Design and develop tools and pipelines for complex biological data.
• Maintain and improve existing applications while troubleshooting issues.
• Optimize performance and ensure reproducible, robust results.
• Collaborate with scientific teams and contribute to publications.
• Lead code reviews, enforce coding standards and secure practices.
• Track new methods and technologies and integrate when relevant.
• Share knowledge through documentation and training for users and teammates.

Connaissances

Python

UNIX/Linux

Bash

Snakemake

Nextflow

Git

Docker

Communication

Teamwork

Autonomy

Problem solving

Formation

Master’s degree in Bioinformatics

Outils

GitLab CI

Cloud (AWS/GCP/Azure)

SLURM

Description du poste

Permanent, full-time Hybrid, Hub-Based

Bioinformatics Engineer - Oncology & Hematology

About SeqOne

SeqOne develops next-generation genomics software that turns complex sequencing data into clear, actionable insights for clinicians and researchers. Our platforms power high-impact applications in oncology and rare disease, with a strong focus on robustness, reproducibility, and speed. We are building a world-class team in Montpellier (FR), Paris (FR), and Cambridge (UK).

Why SeqOne?

• Direct Impact: Your contributions will enhance customer experience and shape the evolution of our genomic products.
• Stimulating Environment: Passionate team, innovative projects, and a culture of transparency.
• Flexibility: Remote work options, flexible hours, and competitive benefits.
• Growth Opportunities: Internal career development, continuous training, and participation in scientific conferences.
• Soft Skills: "Unstoppable Positivity" (resilience and solution-first mindset) and "Open Heart, Hands-On" (kindness combined with direct feedback).

Tasks

As a Bioinformatics Engineer, you will design, build, and operate production-
grade bioinformatics applications and pipelines. You will partner with research and product teams to translate scientific needs into reliable software, lead code quality efforts (reviews, testing, CI/CD) and help the team adopt best practices so that complex analyses become routine, reproducible and scalable.

• Design and develop tools and pipelines for complex biological data.
• Maintain and improve existing applications while troubleshooting and resolving user issues.
• Optimize performance and reliability, ensuring reproducible and robust results.
• Collaborate closely with scientific teams and contribute to publications and presentations.
• Lead code reviews, enforce coding standards and secure practices.
• Track new methods/technologies and integrate them when relevant.
• Share knowledge through documentation creation, training and guidance for both users and teammates.

Requirements

• We are seeking candidates with a Master’s degree (Bac+5) in Bioinformatics, CS or a related field and at least 2 years of experience in bioinformatics development.
• Strong proficiency in Python, UNIX/Linux, and Bash is required.
• Experience with Workflow managers (Snakemake, Nextflow).
• Familiarity with Git (branching, PRs, code reviews) as well as Docker for creating reproducible environnements is essential.
• Candidates should demonstrate clear communication skills, the ability to effectively in a team, autonomy in managing tasks and strong analytical problem-solving abilities.

Nice to have

• A PhD or equivalent research experience is a plus.
• Experience with CI/CD pipelines (GitLab CI, GitHub Actions) is advantageous.
• Knowledge of environment managers such as pyenv, poetry or virtual environments, as well as experience with HPC or Cloud (SLURM, AWS/GCP/Azure) is a strong asset.
• Proficiency in additional programming languages sur as R, Perl, Groovy, Nim or Rust is welcomed.

Benefits

Bases in Montpellier / Paris or Cambridge
Fixed salary, bonus, free health insurance
This position offers flexible working arrangements, including hybrid, on-site, or full remote options