Senior or Principal Data Engineer

Boehringer Ingelheim; Biberach an der Riß; Hybrid; EUR 85.000 - 140.000; Vollzeit

Benefits dieser Stelle

Hybrid work setup (2–3 days on-site)

Zusammenfassung

Boehringer Ingelheim is seeking an exceptional data engineer/Senior or Principal Scientist to design and implement scalable pipelines for multi-omics data across proteomics, single-cell sequencing, and spatial omics. You will work with Computational Innovation to deliver high-quality multimodal data for downstream analysis.

The role emphasizes building maintainable data systems, enabling streamlined ingestion, processing workflows, and AI-assisted optimization in a hybrid setup at the Biberach

Qualifikationen

• PhD or Master’s degree in Bioinformatics, Computational Biology, Computer Science, or a related field.

Aufgaben

• Design and implement scalable data pipelines for omics data processing in collaboration with computational biology and AI/ML teams.
• Leverage agentic AI to streamline data ingestion, engineering, and workflow optimization across modalities.
• Own complex data processing pipelines for proteomics, single-cell RNA seq, spatial omics, and metabolomics; integrate into downstream workflows.
• Collaborate with internal and external partners to standardize data quality and formats across sources.
• Contribute to unified data ecosystem development and delivery standards across teams.
• Develop and optimize computational biology pipelines, databases, and data assets to support cutting-edge research initiatives.
• Strengthen stakeholder relationships and drive workflow improvements for multimodal data capabilities.

Kenntnisse

Python

R

Nextflow

Snakemake

AWS

Azure

Docker

Kubernetes

Ausbildung

PhD or Master’s degree in Bioinformatics/Computational Biology/Computer Science

Tools

Nextflow

Snakemake

Docker

Kubernetes

AWS

Azure

Jobbeschreibung

We are looking for an exceptional data engineer with expertise in multi-omics end-to-end processing to help us uncover novel therapies for our patients. As a Senior Scientist in the Computational Innovation (@computationalinnovation) unit, you will work closely with cross-functional teams, including Computational Biology and AI/ML experts. Our mission is to leverage cutting-edge computational and engineering methods to drive target identification and deliver innovative therapies. Your role will focus on designing and implementing scalable pipelines for emerging omics modalities (e.g., proteomics, single-cell RNA sequencing, spatial omics) and ensuring the seamless delivery of high-quality, multimodal data for downstream analysis. Embedded in Boehringer Ingelheim’s growing CI unit, you will actively contribute to the discovery of breakthrough therapies that improve human health. As part of our team, you will not only create maintainable and sustainable data systems but also leverage agentic AI to streamline data ingestion, engineering, and workflow optimization, ensuring efficient and reproducible data processing across modalities.

Discover our Biberach site: xplorebiberach.com This position has a hybrid setup with approximately 2-3 days per week on site. This position can be filled either as Senior Scientist or Principal Scientist. This position is part time eligible with 80 %.

Tasks & responsibilities

• In close collaboration with computational biology and AI/ML teams, you will design and implement scalable data pipelines, ensuring high-quality, standardized data assets for downstream analysis
• You will leverage agentic AI to streamline data ingestion, engineering, and workflow optimization, driving efficiency and reproducibility across modalities
• Furthermore, you will take ownership of complex data processing pipelines for omics modalities, including proteomics, single-cell RNA sequencing, spatial omics, and metabolomics, ensuring seamless integration into downstream workflows
• You will collaborate with internal and external partners to establish robust data standardization processes, ensuring consistency in data quality and formats across diverse sources
• You will work closely with cross-functional teams to define global standards for data processing, integration, and delivery, contributing to the development of a unified data ecosystem
• You will actively contribute to the development and optimization of computational biology pipelines, databases, and data assets to support cutting-edge research initiatives
• Finally, you will strengthen stakeholder relationships through effective communication and alignment while driving operational excellence by identifying and implementing improvements to workflows, processes, and multimodal data capabilities

Additional tasks for the Principal Scientist role

• You will lead strategic initiatives to define and implement best practices for omics data engineering across the organization
• Moreover, you will identify and establish key partnerships for high-quality human data asset internalization, ensuring access to robust and reliable datasets to support research initiatives
• You will drive innovation by identifying emerging trends and technologies in data processing and integrating them into the team’s workflows
• You will mentor and guide junior scientists and engineers, fostering a culture of collaboration and technical excellence
• You will represent the team in cross-functional discussions, contributing to high-level decision-making and long-term strategy development

Requirements

• PhD or Master’s degree in Bioinformatics, Computational Biology, Computer Science, or a related field with several years of relevant industry experience
• Proven experience in designing and implementing scalable pipelines for omics data processing
• Strong problem-solving and solution-oriented abilities, combined with critical thinking and the willingness to challenge existing practices are essential to drive innovation and efficiency
• Proficiency in programming languages such as Python or R as well as experience with workflow management tools (e.g., Nextflow, Snakemake) and cloud platforms (e.g., AWS, Azure), and familiarity with containerization technologies (e.g., Docker, Kubernetes)
• Solid understanding of omics data types (e.g., genomics, transcriptomics, proteomics) and associated tools, databases, and file formats
• Experience with agentic AI to streamline data ingestion, engineering, and workflow optimization is highly desirable
• Excellent communication and interpersonal skills to collaborate with cross-functional teams

Additional requirements for the Principal Scientist role

• Proven ability to align engineering solutions with strategic goals
• Extensive experience in pharmaceutical or biotech industries, with a proven track record of leading complex projects
• Demonstrated ability to drive cross-functional initiatives and influence organizational strategy
• Expertise in integrating multiple omics modalities and leveraging advanced AI/ML techniques for data analysis

Applications from persons with severe disabilities are warmly welcomed. In cases of equal qualifications, such applicants will be given preferential consideration in the selection process.

Our Company

Boehringer Ingelheim is a biopharmaceutical company active in both human and animal health. As one of the industry's top investors in research and development, the company focuses on developing innovative therapies that can improve and extend lives in areas of high unmet medical need. Independent since its foundation in 1885, Boehringer takes a long-term perspective, embedding sustainability along the entire value chain. Our approximately 54,300 employees serve over 130 markets to build a healthier and more sustainable tomorrow. Learn more at www.boehringer-ingelheim.com.

Why Boehringer Ingelheim?

With us, you can develop your own path in a company with a culture that knows our differences are our strengths - and break new ground in the drive to make millions of lives better.

Here, your development is our priority. Supporting you to build a career as part of a workplace that is independent, authentic and bold, while tackling challenging work in a respectful and friendly environment where everyone is valued and welcomed.

Alongside, you have access to programs and groups that ensure your health and wellbeing are looked after - as we make major investments to drive global accessibility to healthcare. By being part of a team that is constantly innovating, you'll be helping to transform lives for generations.

Want to learn more? Visit https://www.boehringer-ingelheim.com