PhD student - Bioinformatics (m/f/d)- Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganism[...]

Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH; Braunschweig; Vor Ort; EUR 45.000 - 50.000; Teilzeit

Zusammenfassung

Das Leibniz-Institut DSMZ bietet eine Teilzeitstelle als Forschungsassistent/PhD-Kandidat zur Untersuchung von antimikrobieller Resistenzen in Gülle. Die Position umfasst bakterielle Analysen, bioinformatische Auswertungen und interdisziplinäre Zusammenarbeit in einem modernen Laborumfeld. Dadurch bietet sich eine hervorragende Möglichkeit zur Durchführung einer Doktorarbeit in einem dynamischen, internationalen Team.

Leistungen

Moderner Laborbereich mit Hochdurchsatz-Sequenzierung

Leistungsstarke Bioinformatik-Infrastruktur

Interdisziplinäres Arbeitsumfeld mit guten Entwicklungsmöglichkeiten

Doktorat innerhalb eines strukturierten Programms

Qualifikationen

• Master-Abschluss in Lebenswissenschaften oder verwandten Bereichen erforderlich.
• Interesse an Populationsgenetik und Bioinformatik ist essentiell.
• Erfahrung in mikrobiologischen und molekularbiologischen Methoden.

Aufgaben

• Durchführung von mikrobiologischen und molekularbiologischen Analysen.
• Unterstützung von Laborversuchen mit Gülle.
• Bioinformatische Analysen von Genomdaten.

Kenntnisse

Population Genetics

Bioinformatics

Microbiological Methods

Molecular Biological Methods

Programming (Python, R)

English

Ausbildung

Master's degree in Life Sciences or related fields

Jobbeschreibung

Job offer

13/25

The Leibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig is one of the largest bioresource centers worldwide. The Leibniz Institute for Agricultural Engineering and Bioeconomy (ATB) is a pioneer and a driver of bioeconomy research.

We jointly offer the position of a

Research Associate / PhD candidate (m/f/d)

"The role of livestock slurry as a source of antimicrobial resistance"

The position is part-time and initially limited to 3 years. The salary level will be TV-L 13 (65%). The work place will be in the group Microbial Genome Research at DSMZ (Braunschweig). The starting date will be as soon as possible.

DSMZ and ATB are members of the Leibniz Research Alliance „INFECTIONS“ (https://leibnizinfections.de/en/). This research network aims to use interdisciplinary research and communication to develop new strategies and methods for risk assessment, improve outbreak management and optimise control of antimicrobial-resistant pathogens. The research is based on the One Health approach, which accounts for the interaction of humans, animals and the environment. All research is carried out as cooperative projects between several partner institutes.

The position to be filled is associated with Project 8, which will examine the dynamics of microbial communities and antimicrobial resistance in livestock slurry under farm (e.g. InnoHof) and laboratory conditions. The influence of manure types (pig, cattle) and slurry treatment will be a particular focus. Close collaboration partners are at ZALF (Müncheberg), BNITM (Hamburg), IGB (Neuglobsow) and IZW (Berlin) in particular.

YOUR TASKS

• bacteriological and molecular biological analyses of microbial communities in livestock slurry
• supporting laboratory slurry tank experiments
• bioinformatic analyses of large-scale genomic and metagenomic sequence data
• investigation of pathogen transmission and spread
• interdisciplinary collaborations, including the scientific support of guest researchers and visits at partner institutes (e.g. ATB)
• preparation of scientific publications and presentations
• participation in the network of the Leibniz Research Alliance (meetings, social media, podcast)
  
  

YOUR QUALIFICATIONS

• Master's level university degree in the life sciences, or related
• strong interest in population genetics and bioinformatics is essential
• experience with microbiological and molecular biological methods
• basic programming skills (e. g. Python, R) will be a plus
• good command of English
• class B driving license will be useful
  
  

OUR BENEFITS

• state-of-the-art laboratories with high-throughput sequencers (Pacific Biosciences, Illumina)
• dedicated, powerful bioinformatics server infrastructure for data analysis
• interdisciplinary working environment and very good conditions for developing your scientific career and networks
• doctorate within a structured program