System Engineer

BEPC Inc. - Business Excellence Professional Consulting; Pleasanton (CA); On-site; USD 106,000 - 112,000; Full time

Benefits offered by this job

Medical insurance

Dental insurance

Vision insurance

Life insurance

Job summary

BEPC Inc. is actively seeking a Senior System Engineer to join our client site in Pleasanton, CA.

This on-site role supports the End-to-End Solution Integration Chapter and future diagnostic solutions. You will work hands-on across sample preparation, molecular detection technologies, and bioinformatics pipelines while collaborating with assay, software, hardware, and data teams to ensure robust, scalable system performance.

Qualifications

• Bachelor’s degree in Software Engineering, Biomedical Engineering, Systems Engineering, or related field.
• Advanced degree is preferred for advanced roles.
• At least five years of industry experience in system engineering.

Responsibilities

• Conduct system-integration activities across end-to-end workflows, instruments, software, and data pipelines.
• Contribute to requirements definition, defect management, and system testing.
• Design and execute verification and validation test cases for coverage.
• Analyze test results for accuracy and relevance to requirements.
• Report issues, troubleshoot, and perform root-cause analysis.
• Document requirements, specifications, integration plans, and results.
• Identify opportunities for workflow simplification, automation, and continuous improvement.

Education

Bachelor’s degree in Software Engineering, Biomedical Engineering, Systems Engineering, or related

Advanced degree

Tools

Python

Java

Job description

BEPC is actively looking for Senior System Engineer in the Pleasanton, CA area!

W2 Contract – Approximately 12 months with possible extensions!

Benefits include medical, dental, vision, and life insurance

Pay Rate: $77.55 - $80.55 /hour

Determined based on experience (Paid Weekly)

Work Model: Onsite – Monday through Friday, 9:00 a.m.–6:00 p.m. Schedule flexibility may be required based on business needs.

Note: This is a W2 only role — C2C, C2H will not be considered

Summary of the Role:

BEPC is seeking a highly motivated Senior System Engineer to join our client’s site in Pleasanton, CA. This role will support the End-to-End Solution Integration Chapter and its work on next-generation diagnostic solutions.

In this hands-on role, the Senior System Engineer will support the feasibility, development, and integration of complex multidisciplinary systems spanning sample preparation, library preparation, molecular detection technologies such as qPCR, digital PCR, and sequencing, as well as bioinformatics and data-processing pipelines.

The Senior System Engineer will collaborate with assay, software, hardware, and bioinformatics teams to define, integrate, and optimize system-level performance, ensuring technical robustness and operational scalability across diverse technologies.

This role is ideal for a systems-minded engineer with direct industry experience in diagnostic workflows, strong system troubleshooting skills, and a solid engineering background.

The ideal candidate is a fast learner who thrives at the intersection of biology, technology, and data and wants to translate complex scientific workflows into reliable, scalable system solutions. The candidate should be collaborative, curious, driven to make an impact across diverse disciplines, and comfortable operating as an individual contributor with broad cross-functional influence.

Summary of Duties and Responsibilities:

• Conduct system-integration activities across end-to-end workflows, instruments, software, and data pipelines for next-generation diagnostic solutions.
• Contribute to requirements definition, defect management, and system testing.
• Design and execute verification and validation test cases to ensure comprehensive coverage of requirements.
• Analyze test results for accuracy, validity, and relevance to requirements.
• Report issues, troubleshoot problems, and perform root-cause analysis.
• Contribute to system documentation, including requirements, specifications, integration plans, and verification results.
• Identify and lead opportunities for workflow simplification, automation, and continuous improvement.

Qualifications:

• Bachelor’s degree in Software Engineering, Biomedical Engineering, Systems Engineering, or a related discipline.
• At least five years of related industry experience.
• Proven instrument and software troubleshooting experience.
• Strong analytical and problem-solving skills with the ability to work independently.
• Excellent written and verbal communication skills with the ability to influence cross-functional stakeholders.

Preferred Qualifications:

• Advanced degree.
• Experience with cloud-based systems.
• Scripting or programming experience, such as Python or Java.

About BEPC

BEPC Inc., founded in 2007, is a 100% employee-owned company providing top-tier consulting and staffing solutions across industries like technology, engineering, manufacturing, and project management. At BEPC, we are driven by innovation and a commitment to excellence. We take pride in fostering a collaborative and innovative environment where our team members thrive. With competitive benefits, including medical, dental, vision, and life insurance, BEPC is dedicated to supporting our employees' personal and professional growth.