Senior Genomic Data Engineer (Microbiology)

Seneca Holdings; Atlanta (GA); On-site; USD 110,000 - 150,000; Full time

Job summary

Great Hill Solutions, LLC in Atlanta, GA seeks a Microbiologist IV (Genomic Data Engineer) to design and maintain distributed data pipelines for pathogen genomics and epidemiological surveillance. You will collaborate with multidisciplinary teams, ensure data quality, and document workflows.

The role requires expertise in Hadoop ecosystem tools, ETL development, and genomic data handling, with on-site presence for weekly team meetings.

Qualifications

• Bachelor's degree in a relevant field.
• Master's degree preferred in a technical or scientific discipline.

Responsibilities

• Develop, maintain, and optimize Hadoop/Spark-based data pipelines.
• Manage large-scale ETL workflows for genomic and epidemiological data.
• Implement data validation, harmonization, and standardization workflows.

Skills

Hadoop

Spark

Hive

Impala

ETL

Data governance

Git

Python

Scala

Bash

Public health data

Education

Bachelor's degree in Bioinformatics/ Data Science

Master's degree preferred

Tools

GenBank

SRA

Git

Job description

Great Hill Solutions, LLC in Atlanta, GA seeks a Microbiologist IV (Genomic Data Engineer) to design and maintain distributed data pipelines for pathogen genomics and epidemiological surveillance. You will collaborate with multidisciplinary teams, ensure data quality, and document workflows.

The role requires expertise in Hadoop ecosystem tools, ETL development, and genomic data handling, with on-site presence for weekly team meetings.