Genomics Software Engineer — Large-Scale Pipelines

Memorial Sloan Kettering Cancer Center; New York (NY); Hybrid; USD 130,000 - 180,000; Full time

Job summary

A leading cancer research institute in New York seeks a Bioinformatics Software Engineer to develop software systems for large-scale genomic data analysis. This role involves designing scalable pipelines, building APIs, and optimizing workflows in collaboration with researchers and clinicians. Candidates should have strong Python skills and experience with workflow systems like Nextflow. The position offers a competitive salary between $130,000 and $180,000, with a flexible onsite schedule.

Qualifications

• 2+ years of relevant professional or research experience.
• Strong proficiency in Python.
• Experience with workflow systems like Nextflow or Snakemake.

Responsibilities

• Develop and maintain scalable pipelines for genomic data processing.
• Build reusable software components, APIs, and data models.
• Optimize workflows for HPC and cloud computing environments.

Skills

Python

Nextflow

Snakemake

Docker

Singularity

Linux/HPC

bash

Conda

R

Education

Bachelor’s or Master’s degree in Computer Science, Bioinformatics, or a related field

Tools

GitHub Actions

GitLab CI

AWS

GCP

Job description

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