Deep Learning Image Analysis Scientist – 3D Microscopy

alleninstitute; Seattle (WA); On-site; USD 113,000 - 140,000; Full time

Job summary

The Allen Institute is seeking a Data Scientist II specializing in computer vision to develop and implement machine learning methods for 3D timelapse microscopy images. You will own components of the analysis pipeline end to end, collaborating with experimental and computational scientists on scalable workflows.

Requirements include a Bachelor’s degree in a quantitative field, 1+ year of relevant experience, and strong Python with PyTorch or TensorFlow; experience with microscopy data is

Qualifications

• Bachelor’s degree in a related quantitative field.
• 1+ year of relevant experience.
• Proficiency in Python and scientific/data libraries (NumPy, scikit-image).
• Experience with PyTorch or TensorFlow.

Responsibilities

• Design and implement ML/DL pipelines for microscopy image analysis.
• Preprocess and clean large-scale microscopy datasets.
• Develop, optimize, and fine-tune models for segmentation, classification, feature extraction.
• Integrate and scale image analysis protocols into high-throughput pipelines.
• Participate in code reviews and maintainable codebases.

Skills

Python

NumPy

scikit-image

PyTorch

TensorFlow

Education

Bachelor's degree in CS/Engineering/Physics/Data Science/Computational biology

Master's degree or Bachelor's with 4+ years experience

Tools

Git

Open-source tools

Job description

The Allen Institute is seeking a Data Scientist II specializing in computer vision to develop and implement machine learning methods for 3D timelapse microscopy images. You will own components of the analysis pipeline end to end, collaborating with experimental and computational scientists on scalable workflows.

Requirements include a Bachelor’s degree in a quantitative field, 1+ year of relevant experience, and strong Python with PyTorch or TensorFlow; experience with microscopy data is