Bioinformatics Scientist III

Bio-Rad Laboratories; Pleasanton (CA); On-site; USD 138,000 - 189,000; Full time

Benefits offered by this job

Competitive medical plans

Free HSA funds

Fertility stipend

401k + profit sharing

Employee stock purchase program

Education benefits

Wellbeing programs

Learning & development

Job summary

Bio-Rad Laboratories is seeking a Scientist or Senior Scientist to design and own the pipeline development and ML methods for biomarker discovery across multi-omics. You will build containerized analyses on cloud platforms and guide technical direction within a cross-disciplinary team.

The role combines bioinformatics infrastructure ownership, supervised/unsupervised learning, and product-like collaboration with R&D and engineering. Based in California, relocation is not specified.

Qualifications

• MS or PhD in Bioinformatics, Computational Biology, Genomics, or related field.
• 3+ years omics data analysis; 5+ years if ownership of workflows and direction.
• Production workflows in Nextflow or Snakemake with Docker or Singularity.
• Experience on AWS or GCP platforms for cloud analytics.
• Fluent Python and R with solid engineering practices.

Responsibilities

• Design and build reproducible, containerized analysis pipelines on cloud infra.
• Develop ML methods for biomarker discovery with multi-omic data.
• Lead multi-omic integration and cross-modal feature alignment.
• Extend tooling for additional omic modalities and applications.
• Contribute to biomarker discovery architecture with cross-team collaboration.

Skills

Python

PyTorch

scikit-learn

pandas

R

Bioconductor

Seurat

ggplot2

Docker

Nextflow

Snakemake

AWS

GCP

Education

MS/PhD in Bioinformatics

Tools

Nextflow

Snakemake

Docker

AWS

GCP

Job description

Bio-Rad's Clinical Diagnostics Group is building the computational foundation for the next generation of molecular diagnostics, bringing together data across multiple assay modalities to support biomarker discovery and diagnostic development. This role owns the pipeline development and machine learning method design behind that effort. It sits within a team covering statistics, computational biology, data science, and software engineering, and is the primary technical owner for bioinformatics infrastructure and ML-driven discovery work. The role will be filled at either the Scientist or Senior Scientist level depending on the experience of the candidate, with the Senior level carrying broader ownership of technical direction and mentorship within the team.

How You'll Make an Impact:

• Design and build reproducible, containerized analysis pipelines for high-dimensional biological data on cloud infrastructure, and establish the reproducibility and CI/CD standards the team builds against.
• Develop machine learning methods for biomarker discovery, including supervised, unsupervised, and deep learning approaches applied to biological data.
• Lead multi-omic integration work, aligning features across assay modalities into unified patient-level models.
• Extend internal assay design tooling to support additional omic modalities and new application areas.
• Contribute to the architecture of an in-house biomarker discovery capability, from candidate generation through feasibility assessment, in partnership with assay development, R&D, and product teams.

What You Bring:

• Education: M.S. or Ph.D. in Bioinformatics, Computational Biology, Genomics, or a related technical field.
• Work Experience: 3+ years of hands-on omics data analysis (RNA-seq, ATAC-seq, proteomics, and/or ddPCR) for the Scientist level, or 5+ years including ownership of production analysis workflows and technical direction for the Senior level.
• Pipeline and Infrastructure: Demonstrated experience building production workflows in Nextflow or Snakemake with Docker or Singularity containerization, deployed on AWS (S3, EC2, Batch) or GCP (Dataproc, Cloud Storage).
• Machine Learning and Integration: Supervised and unsupervised methods plus practical deep learning experience on biological data, with exposure to multiomics integration and cross-modal feature alignment.
• Software Development: Fluency in Python (PyTorch, scikit-learn, pandas) and R (Bioconductor, Seurat, ggplot2), with strong engineering practice in version control, code review, testing, and documentation.

Location:

This position must be based in Pleasanton, CA or Irvine, CA and requires the employee to be located within commuting distance of the office.

Total Rewards Package:

At Bio-Rad, we're empowered by our purpose and recognize that our employees are as well. That's why we offer a competitive and comprehensive Total Rewards Program that provides value, quality, and inclusivity while satisfying the diverse needs of our evolving workforce. Bio-Rad's robust offerings serve to enrich the overall health, wealth, and wellbeing of our employees and their families through the various stages of an employee's work and life cycle.

Benefits:

• competitive medical plans for you and your family
• free HSA funds
• a new fertility offering with stipend
• group life and disability
• paid parental leave
• 401k plus profit sharing
• an employee stock purchase program
• a new upgraded and streamlined mental health platform
• extensive learning and development opportunities
• education benefits
• student debt relief program
• pet insurance
• wellness challenges and support
• paid time off
• Employee Resource Groups (ERG's)
• and more!

Compensation:

The estimated base salary range for this position is $137,600 to $189,200 at the time of posting. Actual compensation will be provided in writing at the time of offer, if applicable, and is based on several factors we believe fairly and accurately impact compensation, including geographic location, experience, knowledge, skills, abilities, and other job permitted factors. This position is eligible for a variable annual bonus, which is dependent upon achievement of your individual objectives and Company performance.

Who We Are:

For 70 years, Bio-Rad has focused on advancing the discovery process and transforming the fields of science and healthcare. As one of the top five life science companies, we are a global leader in developing, manufacturing, and marketing a broad range of high-quality research and clinical diagnostic products. We help people everywhere live longer, healthier lives. Bio-Rad offers a unique employee experience with collaborative teams that span the globe. Here, you are supported by leadership to build your career and are empowered to drive change that makes an impact you can see.

EEO Statement:

Bio-Rad is an Equal Employment Opportunity/Affirmative Action employer, and we welcome candidates of all backgrounds. Veterans, people with physical or mental disabilities, and people of all race, color, sex, sexual orientation, gender identity, religion, national origin and citizenship status are encouraged to apply.

Legal Entity: (USA_1000)Bio-Rad Laboratories, Inc.