Bioinformatics Full-Stack Engineer for Genomic Pipelines

Signature Science, LLC

Charlottesville (VA)

On-site

USD 120,000 - 180,000

Full time

14 days+

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Job summary

Signature Science, LLC in Charlottesville, VA is seeking a bioinformatics full-stack developer to build and maintain software bridging frontend user-facing applications and backend bioinformatics pipelines, analyzing nucleotide sequence data to deliver actionable reports on local hardware. The role is a full-time, on-site position at the Signature Science office in Charlottesville, VA.

You will oversee and contribute to an integrated software stack for characterization of DNA sequencing data and

Qualifications

  • 5+ years of previous work experience in a full-stack developer role.
  • BS/BA in Computer Science, Software Engineering, Bioinformatics, or related field.
  • MS or PhD in Computer Science, Software Engineering, Bioinformatics, or related field.
  • Experience managing and analyzing large-scale datasets produced by DNA sequencing platforms and delivering solutions for managing, visualizing, analyzing, and interpreting genomic data.

Responsibilities

  • Work with a team to develop and test full-stack software for analysis and interpretation of whole genome sequencing data, including front and back-end software components.
  • Implement and test data processing workflows and automated analysis pipelines. Optimize reproducible software pipelines that produce consistent, standardized results.
  • Oversee workflow bench marking and testing, identifying inconsistencies and resolving issues.
  • Contribute to management of computing hardware, operational logistics, and data warehousing.
  • Contribute to the preparation of standard operating procedures, document source code/workflows, and write reports to summarize computational requirements, processing status, and customized analysis results.
  • Communicate and interact regularly with project team members and stakeholders.

Skills

Unix/Linux
Git
C++
UI development
Programming languages
CI/CD
Project management
Issue tracking
Communication
Python
R
RMarkdown
tidyverse
Workflow systems

Education

BS/BA in Computer Science, Software Engineering, Bioinformatics, or related field
MS or PhD in Computer Science, Software Engineering, Bioinformatics, or related field

Tools

Nextflow
SnakeMake
Containerization
AWS cloud
Azure cloud

Job description

Signature Science, LLC in Charlottesville, VA is seeking a bioinformatics full-stack developer to build and maintain software bridging frontend user-facing applications and backend bioinformatics pipelines, analyzing nucleotide sequence data to deliver actionable reports on local hardware. The role is a full-time, on-site position at the Signature Science office in Charlottesville, VA.

You will oversee and contribute to an integrated software stack for characterization of DNA sequencing data and

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