Open-Source Bioimaging Fellow: 3D Imaging & AI

Euraxess; Faro; Hybrid; EUR 13,000 - 16,000; Full time

Job summary

CCMAR – Centro de Ciências do Mar do Algarve invites applications for a Research Fellowship in Bioimaging within the IMAGINE project. A Master’s degree is required and the candidate will participate in open-source imaging tool development and related research activities in Portugal.

The fellowship focuses on low-cost optical imaging, 3D whole-body imaging, and integration with Napari and ImageJ, with dissemination through open science and international collaboration.

Qualifications

• Hands-on experience with optical imaging systems
• Experience designing or assembling custom experimental setups
• Proficiency in Python or C++ for data acquisition/instrument control

Responsibilities

• Design and build an open-source 3D optical imaging system prototype
• Prototype components using 3D printing
• Integrate imaging methods into user-friendly plugins for Napari/ImageJ
• Collaborate with CCMAR and partners to validate methods

Skills

Hands-on imaging experience

Programming for data acquisition

Python or C++

Open-source software

Education

Master’s degree in Physics/Engineering/Biomedical Engineering

Bachelor’s degree in Physics/Engineering/Biomedical Engineering

Tools

Napari

ImageJ

3D printing

Job description

CCMAR – Centro de Ciências do Mar do Algarve invites applications for a Research Fellowship in Bioimaging within the IMAGINE project. A Master’s degree is required and the candidate will participate in open-source imaging tool development and related research activities in Portugal.

The fellowship focuses on low-cost optical imaging, 3D whole-body imaging, and integration with Napari and ImageJ, with dissemination through open science and international collaboration.