Bioinformatics Engineer: Scalable Genomics Pipelines Remote

SeqOne; Paris; Hybride; Confidentiel; Plein temps

Avantages offerts par ce poste

Free health insurance

Bonus

Flexible working arrangements

Résumé du poste

SeqOne is seeking a Bioinformatics Engineer to design, build, and operate production-grade bioinformatics pipelines. You will partner with research and product teams to translate scientific needs into reliable software, lead code quality efforts (reviews, testing, CI/CD) and help the team adopt best practices so analyses are reproducible and scalable.

You will design tools, maintain applications, and collaborate across biology and software teams, with opportunities to contribute to publications

Qualifications

• Master’s degree in bioinformatics or CS with at least 2 years in bioinformatics development.
• Strong proficiency in Python, UNIX/Linux, and Bash.
• Experience with workflow managers such as Snakemake or Nextflow.
• Familiar with Git and Docker for reproducible environments.
• Excellent communication, teamwork, autonomy and analytical problem‑solving.

Responsabilités

• Design and develop tools and pipelines for complex biological data.
• Maintain and improve existing applications while troubleshooting and resolving user issues.
• Optimize performance and reliability to ensure reproducible results.
• Collaborate with scientific teams and contribute to publications and presentations.
• Lead code reviews, enforce coding standards and secure practices.
• Track new methods/technologies and integrate them when relevant.
• Share knowledge through documentation, training and guidance for users and teammates.

Connaissances

Python

UNIX/Linux

Bash

Git

Communication skills

Team collaboration

Autonomy

Analytical thinking

Formation

Master's degree in Bioinformatics

Master's degree in CS or related field

Outils

Snakemake

Nextflow

GitLab CI

GitHub Actions

pyenv

Poetry

Virtual environments

SLURM

AWS

GCP

Azure

Description du poste

SeqOne is seeking a Bioinformatics Engineer to design, build, and operate production-grade bioinformatics pipelines. You will partner with research and product teams to translate scientific needs into reliable software, lead code quality efforts (reviews, testing, CI/CD) and help the team adopt best practices so analyses are reproducible and scalable.

You will design tools, maintain applications, and collaborate across biology and software teams, with opportunities to contribute to publications