Variant Analyst - UNCH Molecular And Cytogenetics

UNC Health; United States; On-site; USD 54,000 - 76,000; Full time

Job summary

UNC Health in Chapel Hill seeks a Variant Analyst within the UNC Medical Center McLendon Clinical Laboratories to analyze patient genetic data and identify variants linked to cancer and heritable disease. You will lead and educate team members on variant interpretation within the UNC Medical Center Molecular Pathology and Genetics Laboratory.

You will develop and maintain variant databases, create interpretation workflows, and design reporting processes while collaborating with directors,

Qualifications

• Masters or PhD required in bioinformatics/genetics or related fields.
• Experience evaluating clinical validity, variant curation, or interpretation.
• Familiarity with ACMG/CAP guidelines for germline and somatic variants.

Responsibilities

• Variant database development and analysis for targeted panels.
• Develop and apply interpretation workflows based on guidelines.
• Develop reporting workflows and ensure quality across reports.
• Collaborate with medical and technical staff daily.

Skills

NGS interpretation

Bioinformatics tools

ACMG/CAP guidelines

SAS

R

Python

SQL

Communication skills

Project management

Education

Masters or PhD in Bioinformatics, Human Genetics, Genetic Counseling, or related

Tools

GATK

IGV

NCBI

COSMIC

Job description

Description

Your passion belongs at UNC Health. Join more than 56,000 teammates working together to improve the health and well-being of the communities we serve across North Carolina.

Summary

Variant Analysts are experts within the UNC Medical Center McLendon Clinical Laboratories regarding the analysis of patient genetic data for identification of genetic variants associated with cancer and heritable disease. This role will lead and educate other team members on variant interpretation within the UNC Medical Center Molecular Pathology and Genetics Laboratory. Key functions of this position include (1) the development and maintenance of variant databases to support targeted somatic and germline next-generation sequencing panels, (2) development and application of variant interpretation workflows based on professional guidelines for somatic and germline variants, and (3) development of reporting workflows. Variant classification will occur in a CLIA-certified, CAP-accredited clinical laboratory guided by existing professional guidelines and incorporating data from peer-reviewed literature, public and private databases, and other sources. This position will interact on a daily basis with an engaged team of medical and technical directors, clinical laboratory scientists, and bioinformaticians. This individual will bring expertise in genetics, genomics, statistics, and informatics to an existing highly functional team. The Variant Analyst is a critical member of a team focused on supporting optimal molecular-guided care for UNC Health patients.

Description

Your passion belongs at UNC Health. Join more than 56,000 teammates working together to improve the health and well-being of the communities we serve across North Carolina.

Summary

Variant Analysts are experts within the UNC Medical Center McLendon Clinical Laboratories regarding the analysis of patient genetic data for identification of genetic variants associated with cancer and heritable disease. This role will lead and educate other team members on variant interpretation within the UNC Medical Center Molecular Pathology and Genetics Laboratory. Key functions of this position include (1) the development and maintenance of variant databases to support targeted somatic and germline next-generation sequencing panels, (2) development and application of variant interpretation workflows based on professional guidelines for somatic and germline variants, and (3) development of reporting workflows. Variant classification will occur in a CLIA-certified, CAP-accredited clinical laboratory guided by existing professional guidelines and incorporating data from peer-reviewed literature, public and private databases, and other sources. This position will interact on a daily basis with an engaged team of medical and technical directors, clinical laboratory scientists, and bioinformaticians. This individual will bring expertise in genetics, genomics, statistics, and informatics to an existing highly functional team. The Variant Analyst is a critical member of a team focused on supporting optimal molecular-guided care for UNC Health patients.

Responsibilities

• Variant Database Development and Variant Analysis – Assists in design and development of variant databases to automate and streamline variant reporting in support of targeted somatic and germline next-generation sequencing panels. Participates in design/development of variant data investigation workflows, reporting and analytical solutions. Develops and/or enhances database objects, including queries, procedures, and views. Establishes scalable, efficient, automated processes for large panel variant analyses, including validation and implementation.
• Technical Reporting & Documentation - Develops and monitors quality assurance metrics. Creates and/or manages interfaces between analysis software, variant databases and the Epic/Beaker electronic medical record result reporting software. Designs and/or enhances final clinical diagnostic report structure/layout.
• Technical Support and Expertise - Works closely with medical and technical directors, clinical laboratory scientists to identify and advise efficient analysis and reporting workflow decisions. Provides application support by analyzing reported defects and replicating/fixing the defects. Acts as a resource for variant classification guided by incorporating data from peer-reviewed literature, public and private databases, and other sources. Ensures analysis and reporting quality by creating, conducting, and documenting testing and validation. Identifies technical roadblocks and troubleshoots and resolves functional and performance related issues.
• Collaboration and Teamwork - Works with teams to generate and organize workflows and policies necessary for effective clinical diagnostic analysis and reporting. Develops and maintains working relationships with internal departments and external contacts as appropriate.

Other Information

Other information:

Education Requirements

• Masters or PhD in Bioinformatics, Human Genetics, Genetic Counseling, or related area.

Licensure/Certification Requirements

• No licensure or certification required.

Professional Experience Requirements

• If a Master’s degree: Three (3) years of relevant experience.
• If a Doctorate degree: Two (2) years of relevant experience.
• Previous research or clinical experience evaluating clinical validity, variant curation, or variant interpretation for genetic testing assays.

Knowledge/Skills/and Abilities Requirements

Experience in next-generation sequencing technologies and interpretation strategies. Familiarity with bioinformatics tools and databases (eg GATK, IGV, NCBI, COSMIC). Knowledge of ACMG/CAP guidelines for interpretation and classification of germline and somatic variants. Computer skills are preferred, with knowledge in relevant software packages and languages such as, but not limited to, SAS, R, Python, SQL. A high degree of professionalism, enthusiasm, autonomy and initiative on a daily basis. Ability to work independently in a fast-paced environment. Excellent project management, planning, communication, documentation, organizational, analytical and problem-solving abilities. Ability to interpret and summarize results of various analyses in a timely and meaningful way. Ability to communicate clearly and effectively both orally and in writing.

Job Details

Legal Employer: STATE
Entity: UNC Medical Center
Organization Unit: UNCH Molecular And Cytogenetics
Work Type: Full Time
Standard Hours Per Week: 40.00
Salary Range: $38.55 - $55.43 per hour (Hiring Range)
Pay offers are determined by experience and internal equity
Work Assignment Type: Onsite
Work Schedule: Day Job
Location of Job: US:NC:Chapel Hill
Exempt From Overtime: Exempt: Yes
This is a State position employed by UNC Health Care System with UNC Health benefits. If, however, you are presently an employee of another North Carolina agency and currently participate in TSERS or the ORP, you will be eligible to continue participating in those plans at UNC Health.
Qualified applicants will be considered without regard to race, color, religion, sex, sexual orientation, gender identity, national origin, age, genetic information, disability, status as a protected veteran or political affiliation.
UNC Health makes reasonable accommodations for applicants' and employees' religious practices and beliefs, as well as applicants and employees with disabilities. All interested applicants are invited to apply for career opportunities. Please email [e-mail] if you need a reasonable accommodation to search and/or to apply for a career opportunity.