Scientist II, Automated Strain Engineering

Recombia-Biosciences,-Inc.; Brisbane (CA); On-site; USD 105,000 - 168,000; Full time

Benefits offered by this job

Health, dental, vision, and 401(k)

11 paid holidays

Career growth opportunities

Competitive compensation starting day

Job summary

Recombia Biosciences is seeking a Scientist II for Automated Strain Engineering in Brisbane, CA. You will lead high-throughput cloning, yeast strain construction, and automation-enabled workflows to accelerate project timelines.

You will mentor junior researchers, collaborate with automation and software teams, and leverage AI for design and analysis while maintaining a strong safety culture in a dynamic startup-like environment.

Qualifications

• PhD in molecular biology or related field with 2+ years industry experience, or Master's with 7+ years.
• Expert-level hands-on experience in molecular biology (PCR, DNA purification, cloning, genome editing, DNA sequencing) of yeast and bacteria.
• Experience in microbial strain construction and characterization, particularly Saccharomyces cerevisiae.
• Ability to analyze sequencing data using bioinformatics pipelines.

Responsibilities

• Demonstrate safety-first culture and follow all safety protocols.
• Develop and onboard high-throughput cloning methodologies and strain construction techniques.
• Execute high-quality cloning experiments using modular cloning, Gibson Assembly, and related methods.
• Design and implement transformation, gene editing, screening, and verification protocols.
• Translate benchtop protocols into automation-compatible formats and work with Automation Engineers.
• Collaborate with software developers to create scalable automated workflows.
• Apply Python or similar tools for autonomous data analysis and visualization.
• Mentor junior researchers and support lab operations and materials management.

Skills

Excellent cloner

Strain engineering

Builder

Sequence analyst

Code-capable

Team player

Education

PhD in Molecular Biology, Genetics, Biochemistry, Chemical Engineering, Bioengineering, or related field

MS with 7+ years of relevant industry experience

Tools

Benchling

Job description

Scientist II, Automated Strain Engineering

Job Category: Research and Development

Requisition Number: SCIEN003014

• Posted : September 10, 2026
• Full-Time

Locations

Showing 1 location

Brisbane, CA 94005, USA

Description

Scientist II, Automated Strain Engineering

Location: Brisbane, CA

Employment Type: Full-time, on-site

Elevate the Future with Lesaffre

For over 170 years, Lesaffre has been a pioneering force in the world of fermentation, harnessing the power of microorganisms to transform industries from baking to healthcare. As a key global player, we've built a presence in 96 countries, employing 11,000 passionate innovators who share our unwavering commitment to excellence.

Driven by our core values of passion, respect, trust, entrepreneurship, and humility, we're constantly pushing the boundaries of what's possible. Our 3-billion euro enterprise collaborates with visionary customers, partners, and researchers to develop essential nutrients and bioactives that strengthen human health, optimize animal well-being, and improve plant nutrition.

Discover Recombia!

Recombia Biosciences is a dynamic and innovative company that specializes in developing and commercializing cutting‑edge microbial solutions. As part of the Lesaffre Group since 2022, Recombia leverages extensive expertise in fermentation and microbiology to apply advanced biotechnology, such as metabolic and genome engineering and synthetic biology, in creating customized microbial strains with enhanced functionalities using precision fermentation.

Recombia's mission is to blend biology, engineering, automation, and informatics to improve organism engineering, screening, selection, and scale‑up for a wide portfolio of precision fermentation and biomass production applications, serving diverse industries including baking, brewing, bioethanol, flavours, food, nutraceuticals, and pharmaceuticals.

What We Offer

• The opportunity to represent a passionate organization focused on innovation and sustainability.
• Competitive compensation and comprehensive benefits starting on day one, including health, dental, vision, and 401(k) with employer match.
• 11 paid holidays.
• The ability to leverage your expertise and make a tangible, meaningful impact on the business and our sustainability initiatives.
• Opportunities for continuous growth and development, including the ability to take on new challenges and collaborate across our international business units.

Pay Range: $105K to $168K annually commensurate with qualifications and experience

What You'll Contribute To Our Success

As a Scientist II in the Automated Strain Engineering (AuSE) Team, you will drive innovation in high-throughput cloning and yeast strain construction. You will develop new cloning methodologies and strain construction techniques, then scale them to high-throughput and automated workflows. You will identify processes for optimization, develop robust manual protocols, and collaborate with our Automation Engineer to translate them into scalable, automated systems. Your work reduces turnaround time, increases capacity, and enables metabolic engineering teams to achieve project goals.

You thrive in a startup‑like environment where you wear multiple hats and see problems as opportunities to build better processes. You are a builder and take manual workflows and make them high-throughput, then automated. You mentor junior researchers, help colleagues become more efficient, and think constantly about scaling science and freeing researcher time for creativity.

Who You Are

• Excellent cloner: Highly skilled in Golden Gate, Gibson assembly, yeast homologous recombination, and restriction enzyme cloning.
• Strain engineering expert: Deep expertise in microbial genome editing, strain construction and characterization (Saccharomyces cerevisiae yeast and other microbes).
• Builder: Identify problems, propose solutions, and execute them. Turn manual work into high-throughput and automated processes.
• Sequence analyst: Analyze sequencing data, make QC decisions on DNA constructs, assemble genomes, and run routine sequence analysis.
• Code-capable: Recognize when software solves a lab problem, write simple scripts or adapt existing pipelines, and collaborate with developers on complex tools. AI‑assisted approaches are part of your toolkit.
• Team player: Thrive in collaborative, service-oriented environments. Mentor junior researchers, comfortable in fast-moving environments, and pitch in on lab operations.

What You’ll Do As a Scientist II, Automated Strain Engineering

• Safety
  • Demonstrate an unwavering commitment to Lesaffre's safety‑first culture by strictly following all safety protocols and participating in required safety programs.
• High-Throughput Cloning & Strain Construction
  • Develop and onboard new cloning methodologies and strain construction techniques.
  • Execute high-quality cloning experiments independently using modular cloning, Gibson Assembly, yeast homologous recombination, PCR, and other techniques.
  • Design and execute strain transformation, gene editing, screening, and verification protocols to meet project goals.
• Process Development
  • Translate benchtop lab protocols into automation-compatible formats and design experiments to validate output quality and consistency.
  • Collaborate with Automation Engineers and Software Developers to translate manual protocols into scalable, automated workflows.
• Data Management & Analysis
  • Apply Python or similar tools for autonomous data analysis and visualization.
  • Perform sequence analysis using existing bioinformatics pipelines and make QC decisions.
  • Leverage AI creatively for experiment design, data analysis, and process optimization.
• Collaboration & Operations
  • Collaborate with metabolic engineering teams to deliver strains and DNA constructs that enable project success.
  • Mentor junior research associates and technicians on technical methods and best practices.
  • Contribute to lab operations: ordering supplies, troubleshooting equipment, and preparing materials.
  • Other duties as assigned.

Required qualifications

• PhD in Molecular Biology, Genetics, Biochemistry, Chemical Engineering, Bioengineering, or related field, with 2+ years of relevant industry experience; OR Master's degree with 7+ years of relevant industry experience.
• Expert-level hands‑on experience in molecular biology (PCR, DNA purification, molecular cloning, genome editing, DNA assembly, DNA sequencing) of yeast and bacteria.
• Demonstrated expertise in microbial strain construction and characterization, particularly Saccharomyces cerevisiae or other industrially relevant yeasts.
• Ability to analyze sequencing data and perform routine sequence analysis using bioinformatics pipelines.
• Experience designing or adapting protocols for high-throughput workflows.
• Familiarity with LIMS systems (Benchling preferred).
• Proficiency in programming and statistical data analysis using Python, R, or similar.
• Creative and responsible use of AI tools for experiment design, data analysis, or process optimization.

Preferred qualifications

• Experience with Design of Experiments (DOE) methodology.
• Hands‑on experience with fermentation, bioreactors, or chromatography (HPLC, GC).

Lesaffre provides equal employment opportunities to all employees and applicants for employment and prohibits discrimination and harassment of any type without regard to race, color, religion, age, sex, national origin, disability status, genetics, protected veteran status, sexual orientation, gender identity or expression, or any other characteristic protected by federal, state, or local laws.

Equal Opportunity Employer

This employer is required to notify all applicants of their rights pursuant to federal employment laws. For further information, please review the Know Your Rights notice from the Department of Labor.