Graduate Research Assistant: Bioinformatics & Data Science

Penn State University

State College (Centre County)

On-site

USD 24,000 - 36,000

Full time

4 days ago
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Job summary

Penn State University invites applications for Graduate Research Assistant positions with the National Synthesis Center for Emergence in the Molecular and Cellular Sciences (NCEMS). These roles support multiple Working Groups and provide mentored research experience starting in Summer 2026, with semester-by-semester appointments and potential renewal.

Selected Graduate Research Assistants will process and analyze high-throughput datasets, develop reproducible pipelines, and contribute to

Qualifications

  • Applicants must be full-time doctoral students at Penn State University Park.
  • Strong communication, organization and technical skills are required.
  • Ability to work independently while collaborating with staff and interdisciplinary teams.

Responsibilities

  • Support community-scale synthesis research by contributing to NCEMS Working Groups.
  • Process and analyze molecular datasets, including transcriptomics and gene regulatory data.
  • Develop, run, and maintain reproducible computational pipelines and workflows.
  • Integrate and analyze multi-omics or multi-modal datasets for synthesis research.
  • Contribute to additional project areas including machine learning and applications in proteomics and molecular dynamics.
  • Produce and maintain well-documented code, notebooks and workflows.
  • Provide weekly progress updates during meetings with mentoring staff.
  • Prepare interim and final reports or presentations as requested.
  • Participate in regular meetings with mentoring staff and Working Group members to review progress.

Skills

Python
R
Machine learning
Transcriptomics
Multi-omics data
Snakemake
Nextflow
Linux

Tools

Snakemake
Nextflow

Job description

Penn State University invites applications for Graduate Research Assistant positions with the National Synthesis Center for Emergence in the Molecular and Cellular Sciences (NCEMS). These roles support multiple Working Groups and provide mentored research experience starting in Summer 2026, with semester-by-semester appointments and potential renewal.

Selected Graduate Research Assistants will process and analyze high-throughput datasets, develop reproducible pipelines, and contribute to

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