Bioinformatics Software Engineer II- Remote, USA

Ambry Genetics; United States; Remote; USD 130,000 - 145,000; Full time

Job summary

Join a forward-thinking company as a Bioinformatics Software Engineer II, where you will develop and maintain cutting-edge computational pipelines for clinical sequencing data. In this remote role, you will implement robust bioinformatics solutions using Nextflow, Python, and AWS technologies. Collaborate with cross-functional teams to ensure quality standards while troubleshooting complex technical issues. This dynamic environment offers an opportunity to make a significant impact on healthcare through innovative genetic testing solutions. Enjoy a comprehensive benefits package, including competitive salary and performance incentives, while contributing to the understanding of human diseases.

Benefits

401k

Medical insurance

Dental insurance

Vision insurance

Paid sick leave

Generous paid time off

Qualifications

• 3+ years of experience in bioinformatics or related field.
• Strong proficiency in Python and experience with Nextflow.

Responsibilities

• Develop and maintain bioinformatics data pipelines using Nextflow and Python.
• Implement cloud-based solutions utilizing AWS services.

Skills

Python

Nextflow

AWS

Linux

Git

Bioinformatics NGS pipelines

Problem-solving

Software testing methodologies

Education

Bachelor's degree in bioinformatics, computer science, or related discipline

Advanced degree in bioinformatics or computer science

Tools

Docker

Job description

Bioinformatics Software Engineer II- Remote, USA

Bioinformatics Software Engineer II- Remote, USA

Compensation: $130,000 - $145,000 per year. You are eligible to a Short-Term Incentive Plan with the target at 7.5% of your annual earnings, terms and conditions apply.

Bioinformatics Software Engineer II- Remote, USA

The Bioinformatics Engineer II is responsible for developing and maintaining computational pipelines for processing clinical sequencing data from customers. This position focuses on implementing robust, scalable bioinformatics solutions using Nextflow, Python, and AWS technologies. This role requires technical proficiency to ensure reliable processing and analysis of customer sequencing data while adhering to quality standards and performance benchmarks.

Essential Functions

• Develop and maintain bioinformatics data pipelines using Nextflow and Python
• Implement cloud-based solutions utilizing AWS services for efficient data processing
• Refactor existing pipelines to improve performance, maintainability, and scalability
• Apply software development best practices including version control, testing, and documentation
• Troubleshoot and resolve complex technical issues independently
• Design and develop new pipeline components and data analysis methods
• Collaborate with cross-functional teams to implement clinical requirements
• Maintain code quality through code reviews and adherence to coding standards
• Monitor pipeline performance and implement optimizations
• Other duties as assigned

Qualifications

• Bachelor's degree in bioinformatics, computer science, or related discipline
• At least 3+ years of relevant industry experience
• Strong proficiency with Python programming and Linux environments
• Experience with Nextflow or similar workflow management systems
• Experience with Illumina sequencing data and bioinformatics NGS pipelines
• Knowledge of version control systems, particularly Git
• Demonstrated ability to solve problems independently
• Experience with bioinformatic data formats and processing methods
• Familiarity with AWS cloud services
• Ability to work effectively in a collaborative environment
• Experience with software testing methodologies
• Strong analytical and debugging skills

Preferred

• Advanced degree in bioinformatics, computer science, or related disciplines
• Experience with clinical genomics
• Experience with Docker and containerized applications
• Experience working in a cloud environment (AWS)
• Experience working in a regulated setting

About Us:

Ambry Genetics Corporation is a CAP-accredited and CLIA-licensed molecular genetics laboratory based in Aliso Viejo, California. We are a genetics-based healthcare company that is dedicated to open scientific exchange so we can work together to understand and treat all human disease faster.

At Ambry, everyone is welcome. A career at Ambry Genetics is a chance to be part of a dynamic company that aims to improve health by understanding the relationships between genetics and human disease. We earned our reputation as industry leaders by responsibly introducing cutting-edge genetic testing solutions and continually sharing what we learn with the global scientific community.

At Ambry you will be learning, challenging yourself, and having fun while collaborating with teammates through the open exchange of ideas. Our outstanding benefits program includes 401k, medical, dental, vision, FSA, paid sick leave and generous paid time off (PTO) program. Ambry Genetics is an Equal Opportunity Employer (EOE) and we maintain a drug-free work environment.

The Company believes in second chance employment. Qualified applicants with arrest or conviction history will be considered regardless of their arrest or conviction history, consistent with local laws such as Los Angeles County Fair Chance Ordinance and the California Fair Chance Act. You do not need to disclose your criminal history or participate in a background check until a conditional job offer is made to you. After making a conditional offer and running a background check, if the Company is concerned about conviction that is directly related to the job, you will be given the chance to explain the circumstances surrounding the conviction, provide mitigating evidence, or challenge the accuracy of the background report. For the purpose of the above job description, “Essential Functions” are “Material Job Duties”.

Our salary ranges are determined by role, level, and location. The range displayed on each job posting reflects the minimum and maximum target for new hire salaries for the position across all US locations. Within the range, individual pay is determined by work location and additional factors, including job-related skills, experience, and relevant education or training.

All qualified applicants will receive consideration for employment without regard to race (and traits historically associated with race, including, but not limited to hair texture and protective hairstyles such as braids, locks, and twists), color, creed, religion, sex, sexual orientation, gender identity, gender expression (including transgender status), national origin, ancestry, age, marital status or protected veteran status and will not be discriminated against on the basis of disability, protected medical condition as defined by applicable state or local law, genetic information, or any other characteristic protected by applicable federal, state, or local laws and ordinances. If you have a disability or special need that requires accommodation, please contact us at [e-mail]

Ambry does not accept unsolicited resumes from individual recruiters, third party recruiting agencies, outside recruiters or firms without an executed contract in place. We are not responsible for any fees related to resumes that are unsolicited or are received by Ambry. Such resumes will be deemed the sole property of Ambry and will be processed accordingly.

PRIVACY NOTICES

To review the California privacy notice, click here: California Privacy Notice | Ambry Genetics

To review the UKG privacy notice, click here: California Privacy Notice | UKG

Seniority level

• Seniority level

  Mid-Senior level

Employment type

• Employment type

  Full-time

Job function

• Job function

  Engineering and Information Technology

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