Bioinformatics Software Engineer

Creative Solutions Services, LLC; Austin (TX); Remote; USD 80,000 - 120,000; Full time

Job summary

An innovative firm is seeking a Bioinformatics Software Engineer to design and develop robust data pipelines and tools for genomic and proteomic analysis. This role involves working with large datasets, optimizing ETL processes, and deploying applications on cloud platforms. The successful candidate will collaborate with domain experts to translate their needs into technical solutions, utilizing programming languages such as Python, Perl, and Java. Join a forward-thinking team dedicated to advancing bioinformatics solutions in a fully remote environment, where your contributions will significantly impact research and analysis in the field.

Qualifications

• Bachelor's degree in computer science or related field required.
• Strong proficiency in Python, Perl, and Java programming languages.

Responsibilities

• Design and maintain bioinformatics data pipelines using Python and Apache Airflow.
• Develop scalable Java-based web services and search tools for bioinformatics.

Skills

Python

Perl

Java

Bioinformatics

Problem-solving

Communication

Education

Bachelor’s degree in Computer Science

Bachelor’s degree in Biotechnology

Tools

Apache Airflow

SQL

PL/SQL

MongoDB

Docker

Kubernetes

AWS

Job description

Bioinformatics Software Engineer #24-15248

Austin, TX Fully Remote

Job Description

Bravens Inc., a wholly owned subsidiary of Ampcus Inc., is an information technology consulting and services company. Bravens is a leader in providing tailored staffing solutions across both IT and non-IT industries. We are in search of a highly motivated candidate to join our talented team and contribute to our ongoing success.

Job Title: Bioinformatics Software Engineer

Location(s): Austin, TX (Remote)

Responsibilities:

1. Design, develop, and maintain robust bioinformatics data pipelines using Python, Perl, and Apache Airflow to process large-scale genomic, proteomic, and other biological data.
2. Design, implement, and maintain bioinformatics tools and services, such as ones using BLAST, to support research and analysis.
3. Work with massive datasets, optimizing ETL and CRUD operations for efficient data ingestion, transformation, and storage.
4. Build and maintain SQL scripts and PL/SQL procedures for data manipulation and analysis in relational DBs. Work with Document DBs for flexible and scalable data storage and retrieval using ORM frameworks.
5. Analyze and troubleshoot complex data issues, optimize performance, and implement innovative solutions.
6. Develop and maintain scalable Java-based web services and search tools to expose bioinformatics tools and products to users.
7. Deploy and manage bioinformatics applications on cloud platforms, leveraging technologies like Kubernetes and Docker for containerization and orchestration.
8. Collaborate with domain experts (Product Managers, Bioinformatics scientists) to understand their needs and translate them into technical solutions.

Required Qualifications:

1. Bachelor’s degree in computer science, Biotechnology, or a related field.
2. Solid understanding of bioinformatics concepts including genomics, proteomics, and gene expression analysis, and experimental techniques such as PCR, CRISPR, ELISA, etc.
3. Strong proficiency in programming languages like Java, Python, and Perl.
4. Strong proficiency in Workflow Management systems and platforms like Apache Airflow and experience with big data frameworks like Hadoop.
5. Proficiency in RDBSs and SQL and PL/SQL.
6. Proficiency with NoSQL databases like MongoDB.
7. Experience with Java and web services development including ORM frameworks like Hibernate.
8. Experience with cloud platforms like AWS and containerization technologies like Docker and Kubernetes.
9. Experience with Apache Solr or other search engines a definite plus.
10. Strong problem-solving and analytical skills.
11. Excellent communication and collaboration skills.

Bravens is an Equal Opportunity Employer. All qualified applicants will receive consideration for employment without regard to race, color, religion, sex, sexual orientation, gender identity, national origin, age, protected veterans or individuals with disabilities.