Bioinformatics Research Associate (3 Month Contract)

SeqMatic LLC; Fremont (CA); On-site; USD 61,992 - 75,768; Full time

Job summary

SeqMatic LLC in Fremont, CA is seeking a Bioinformatics Research Associate for a 3-month contract to support our NGS data analysis workflows. You will QC data and perform bioinformatics analyses on bulk RNA and scRNA, while developing and refining analysis pipelines and delivering clear reports.

The role requires a strong background in bioinformatics, Unix/Linux command-line skills, scripting experience, and familiarity with standard NGS tools.

Qualifications

• B.S. or M.S. in Bioinformatics, Computational Biology, Biostatistics or a related science.
• Experience working in a Unix/Linux command-line environment is required.
• Experience with NGS data analysis, especially Illumina or 10X Genomics libraries.
• Familiarity with Bowtie, GATK/Picard, STAR, SAMtools, Cell Ranger or similar tools.
• Experience handling large datasets with HPC; AWS familiarity a plus.
• Proficiency in MS Office; scripting with Python, R, Perl, Bash, Java, or JavaScript.

Responsibilities

• Data QC of NGS sequencing data.
• Bioinformatic analysis of NGS data, particularly bulk RNA and scRNA.
• Custom bioinformatic analysis.
• Develop, maintain, and optimize analysis pipelines.
• Generate data QC and analysis reports.
• Organize and maintain experimental records and lab procedures.
• Communicate with customers and team members.

Skills

Unix/Linux command-line

Scripting languages

Team collaboration

Detail-oriented

Deadline oriented

Education

B.S. or M.S. in Bioinformatics/Computational Biology/Biostatistics

Tools

Bowtie

GATK/Picard

STAR

SAMtools

Cell Ranger

AWS

Job description

Bioinformatics Research Associate (3 Month Contract)

SeqMatic LLC Fremont, California, United States

About this position

SeqMatic is a Next Generation Sequencing (NGS) and omics services provider based in the San Francisco South Bay Area. The company was founded in 2012 by former Illumina R&D scientists who are experts in the NGS workflow and related bioinformatics.

We specialize in Illumina NGS platforms, bulk DNA/RNA-seq, single-cell RNA, as well as custom sequencing services with fast turnaround times. Our lab is CLIA / CAP certified. We recently expanded our capabilities beyond RUO to support clinical trials for our Clients, in addition to incorporating novel technologies such as Spatial Transcriptomics, Epigenetics, Proteomics and Histopathology.

Opportunity

SeqMatic is seeking a bioinformatics research associate to join our sequencing service team on a 3 month contract basis. The position requires a strong background in bioinformatics or a related science, particularly in analyzing NGS data.

Responsibilities

• Data QC of NGS sequencing data
• Bioinformatic analysis of NGS data, particularly bulk RNA and scRNA
• Custom bioinformatic analysis
• Develop, maintain, and optimize analysis pipelines
• Generating data QC and analysis reports
• Organize and maintain experimental records and lab procedures;
• Communicate in person and electronically with customers and team members;

Responsibilities

• Data QC of NGS sequencing data
• Bioinformatic analysis of NGS data, particularly bulk RNA and scRNA
• Custom bioinformatic analysis
• Develop, maintain, and optimize analysis pipelines
• Generating data QC and analysis reports
• Organize and maintain experimental records and lab procedures;
• Communicate in person and electronically with customers and team members;

Qualification Requirements

• B.S. or M.S. in Bioinformatics, Computational Biology, Biostatistics or a related science;
• Experience working in a Unix/Linux command-line environment is required
• Experience working with next-generation sequencing preferred, particularly Illumina or 10X Genomics libraries
• Familiarity with common bioinformatics software tools for processing next-generation sequencing data, such as Bowtie, GATK/Picard, STAR, SAMtools, Cell Ranger, and/or similar applications.
• Experience working with large-scale biological datasets using high-performance computing. Familiarity with cloud computing platforms such as AWS is a plus.
• Proficient using MS Office Software
• Experience with a scripting language (Python, R, Perl, Bash, Java, Javascript) is required
• Ability to work well under pressure to meet deadlines;
• Ability to work independently and with a team;
• Must be detail-oriented and have strong analytical skills;

Qualification Requirements

• B.S. or M.S. in Bioinformatics, Computational Biology, Biostatistics or a related science;
• Experience working in a Unix/Linux command-line environment is required
• Experience working with next-generation sequencing preferred, particularly Illumina or 10X Genomics libraries
• Familiarity with common bioinformatics software tools for processing next-generation sequencing data, such as Bowtie, GATK/Picard, STAR, SAMtools, Cell Ranger, and/or similar applications.
• Experience working with large-scale biological datasets using high-performance computing. Familiarity with cloud computing platforms such as AWS is a plus.
• Proficient using MS Office Software
• Experience with a scripting language (Python, R, Perl, Bash, Java, Javascript) is required
• Ability to work well under pressure to meet deadlines;
• Ability to work independently and with a team;
• Must be detail-oriented and have strong analytical skills;

Note: We do not offer visa sponsorship for this position.

The pay range for this role is: 45 - 55 USD per hour (Fremont Blvd)