Bioinformatics Intern - Protein Design

Syngentagroup; Durham (NC); On-site; USD 28,000 - 62,000; Full time

Benefits offered by this job

Emerging Talent Program

Hands-on experience

Professional development

Job summary

Syngenta's Bioinformatics Team in Durham, NC seeks a Protein Design Intern to join a high-performance scientific team. You will apply computational design methods to generate novel protein candidates and minibinders, optimize workflows, and evaluate variants using sequence- and structure-based analyses.

The role is part of the Emerging Talent Program and offers hands-on experience with open-source tools. Responsibilities include designing, ranking, and filtering protein candidates, running tools

Qualifications

• Pursuing MS/PhD in bioinformatics or related field.
• Proficiency in Python and Bash scripting.
• Knowledge of protein structure concepts, including protein domains and interfaces.
• Familiarity with protein structure prediction methods such as Boltz-2 or AlphaFold.
• Experience with Linux/Unix command line.

Responsibilities

• Apply computational protein design methods to generate novel protein candidates and minibinders to selected targets.
• Optimize workflows that integrate protein design, structure prediction, and ranking approaches.
• Evaluate designed protein variants using sequence- and structure-based analyses.
• Test and run computational protein design tools in Linux, HPC, or cloud environments like AWS.
• Develop Python/Bash scripts for data processing and workflow automation.
• Document workflows, write READMEs, and present findings to cross-functional teams.
• Collaborate with scientists to refine design strategy based on biological insights.
• Summarize results in reports and visuals for follow-up testing.

Skills

Python

Bash

Linux

Data analysis

Communication

Education

MS or PhD student in Bioinformatics, Computational Biology, Structural Biology, Biochemistry, Computer Science, or related field

Tools

PyMOL

ProteinMPNN

Boltz-2

AlphaFold

RFdiffusion

Job description

At Syngenta, our goal is to build the most collaborative and trustworthy team in agriculture, providing top-quality seeds and innovative crop protection solutions that improve farmers' success. We invite you to help shape the future of agriculture and play a role in safely feeding the world while caring for our planet.

Syngenta's Bioinformatics Team is seeking a Protein Design Intern in Durham, NC. This internship role will be part of a high-performance scientific team, developing cutting-edge skills in computational protein design to deliver innovative solutions for agricultural biotechnology.

As part of Syngenta's Emerging Talent Program, you will gain hands-on experience, exposure to day-to-day business operations, and opportunities to apply your academic knowledge to real-world challenges while developing your professional skills.

Duration: May 2027 - August 2027

Role Purpose

Apply computational protein design methods to generate novel protein candidates and minibinders to selected targets.

Optimize workflows that integrate protein design, structure prediction, and ranking approaches to identify promising candidates.

Evaluate designed protein variants using sequence- and structure-based analyses.

Accountabilities

• Leverage open-source protein design and structure prediction workflows using tools such as ProteinMPNN, BoltzGen, and Boltz-2.
• Design, rank, and filter protein candidates based on predicted structure, interface quality, and computational metrics.
• Perform structural analysis and annotation of designed proteins and protein-protein interfaces.
• Test and run computational protein design tools in Linux, HPC, or cloud-based environments such as AWS.
• Develop Python/Bash scripts for data processing, workflow automation, and visualization.
• Document workflows, create user guides and READMEs, and present findings to cross-functional teams.
• Collaborate with and take guidance from other scientists to refine design strategy based on biological insights.
• Summarize design results in clear reports, visualizations, and recommendations for follow-up testing.

Required Qualifications

Education:

• Current MS or PhD student in Bioinformatics, Computational Biology, Structural Biology, Biochemistry, Computer Science, or related field.

Technical:

• Proficiency in Python and basic Bash scripting.
• Basic understanding of protein structure concepts, including protein domains, structural alignment, and protein-protein interfaces.
• Familiarity with protein structure prediction methods such as Boltz-2 or AlphaFold.
• Familiarity with generative protein design or sequence design tools such as RFdiffusion or ProteinMPNN.
• Familiarity with protein structure visualization tools (PyMOL).
• Experience with Linux/Unix command-line environments.

Analytical:

• Ability to work with large datasets and implement reproducible computational workflows.
• Strong problem-solving skills and attention to detail.
• Effective written and verbal communication skills.

Desired Qualifications

• Experience evaluating protein-protein interfaces using structural or energetic metrics (e.g. PyRosetta).
• Knowledge of protein databases such as PDB, UniProt, AlphaFoldDB, or ESM Metagenomic Atlas.
• Experience with HPC or cloud computing environments, such as AWS.
• Experience with workflow automation, containerized tools, or reproducible software environments.
• Self-motivated with ability to work independently and collaboratively.
• Enthusiasm for learning new computational methods and tools.
• Experience presenting technical work to diverse audiences.

Salary for this position ranges between $20 - $45 hourly.

What We Offer

• A culture that celebrates belonging and collaboration, promotes professional development and strives for a work-life balance that supports the team members.
• Competitive wages
• Ongoing career development resources
• The opportunity to work on meaningful, innovative projects that solve problems

Syngenta is committed to creating a culture that celebrates belonging and collaboration, promotes professional development, and strives for a work-life balance that supports the team members.

Syngenta has been ranked as a top employer by Science Journal. Learn more about our team and our mission here: https://www.youtube.com/watch?v=OVCN_51GbNI

Syngenta is an Equal Opportunity Employer and does not discriminate in recruitment, hiring, training, promotion or any other employment practices for reasons of race, color, religion, gender, national origin, age, sexual orientation, marital or veteran status, disability, or any other legally protected status.

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