Software Infrastructure Engineer

ZipRecruiter; Saffron Walden; Hybrid; GBP 80,000 - 100,000; Full time

Job summary

An innovative organization is seeking a Software Infrastructure Engineer to enhance web services for structural biology data. This role offers the chance to work with cutting-edge technologies, including Python and workflow orchestration tools, while contributing to the sustainability of vital scientific services. The position includes flexible working arrangements and a generous benefits package, making it an exciting opportunity for those passionate about IT and bioinformatics. If you're eager to make an impact in a collaborative environment, this role is perfect for you.

Benefits

Private medical insurance

Generous time off (30 days annual leave)

Relocation package

Campus amenities (gym, library, cafeteria)

Flexible working arrangements

Qualifications

• MSc in computer science or bioinformatics with IT expertise.
• Experience with data pipelines and workflow orchestration tools.

Responsibilities

• Support the development and deployment of PDBe and PDBe-KB web services.
• Develop and maintain data pipelines for structural biology data.

Skills

Python (3.x)

Linux scripting

Containerisation

Relational databases (Oracle, PostgreSQL)

Data pipeline development

Workflow orchestration tools (Apache Airflow, Nextflow)

Interpersonal and communication skills

Oral and written English proficiency

Education

MSc in computer science, IT, or related field

PhD in computer science, IT, or related field

Tools

Kubernetes

Web servers (Apache/Nginx)

CI/CD (GitLab CI/GitHub Actions)

Job description

Job Description

We seek a Software Infrastructure Engineer to offer technical support for developing and deploying the PDBe and PDBe-KB web services within the broader ecosystem of EMBL-EBI and the PDBe-KB and wwPDB collaborations.

The tasks for this post include the following:

1. Supporting the weekly release process of PDBe.
2. Supporting the development and deployment of PDBe and PDBe-KB web services, including microservice deployment.
3. Developing and maintaining data pipelines to process and manage large-scale structural biology data.
4. Working with workflow orchestration tools like Apache Airflow and Nextflow.
5. Liaising with the EMBL-EBI Technical Services Cluster.
6. Supporting the development and deployment of other scientific software.

The successful candidate will report directly to the PDBe Infrastructure Lead as a Technical Officer. This role is an opportunity to bring IT skills and innovative ideas to help sustain the growing amount of structural biology data in the PDB and ensure that PDBe and PDBe-KB services remain sustainable.

You have

• MSc in computer science, IT, or a related field, or in bioinformatics with demonstrated IT expertise.
• Expertise in Python (3.x).
• Proficiency in Linux scripting.
• Proficiency in containerisation.
• Proficiency in relational databases (Oracle, PostgreSQL).
• Experience in developing and maintaining data pipelines.
• Hands-on experience with workflow orchestration tools (e.g., Apache Airflow, Nextflow).
• Strong interpersonal and communication skills.
• Proficiency in oral and written English.

You may also have

• PhD in computer science, IT, or a related field, or in bioinformatics with demonstrated IT expertise.
• Experience in using Kubernetes.
• Experience with web servers (Apache/Nginx).
• Hands-on experience with CI/CD (GitLab CI/GitHub Actions).
• Familiarity with networking.
• Familiarity with Java.
• Knowledge of, or interest in, structural biology and bioinformatics.
• Experience working in international teams.

Other helpful information

• Flexible working arrangements, including hybrid working patterns.
• Interview process: technical assessment followed by introductory and panel interviews.

Benefits and contract information

• Financial incentives, including allowances and salary reviews.
• Hybrid working arrangements.
• Private medical insurance for you and your immediate family.
• Generous time off: 30 days annual leave plus bank holidays.
• Relocation package including installation grant.
• Campus amenities: shuttle bus, library, gym, cafeteria, social activities.
• Family benefits: nursery, parental leave, holiday clubs, allowances.
• Contract duration: 3-year grant-based contract.
• Salary: starting at £3,229/month or £3,612 after tax, plus benefits.

International applicants are welcome, with visa exemptions offered. The role is based in Hinxton, near Cambridge, UK, with relocation support provided. To apply, submit a cover letter and CV via our online system. Applications close on 13/05/2025.