Senior Automation Scientist | Medicinal Chemistry

Boehringer Ingelheim; Biberach an der Riß; On-site; EUR 85,000 - 120,000; Full time

Job summary

Boehringer Ingelheim in Germany seeks a Senior Automation Scientist to design, implement, and maintain automated workflows for synthesis, purification, and analysis within our Medicinal Chemistry Automation team.

You will orchestrate multi-instrument systems, define data interfaces with ELN/LIMS and APIs, and collaborate with chemists, automation engineers, and IT to advance automation and data-driven lab workflows.

Qualifications

• Master’s degree in chemistry or related field with >5 years in laboratory automation, robotics or engineering

Responsibilities

• Design, implement, and maintain orchestration workflows for integrated automation platforms.
• Coordinate robotic systems, liquid and solid handlers, analytical instruments and data systems across MAKE cycle stages.
• Define system integration requirements and data interfaces (ELN, LIMS, data lakes, APIs).
• Collaborate with chemists, engineers, data scientists, IT and cross-functional teams.
• Monitor literature and emerging methods to keep automation at the leading edge.

Skills

Automation platforms

Programming (Python)

System integration

Team collaboration

English communication

Education

Master’s degree in chemistry or related field

Tools

Hamilton

Tecan

BioNex

Opentrons

Job description

Join our Medicinal Chemistry team and help shape the future of laboratory automation in drug discovery. We are looking for a passionate and innovative Senior Automation Scientist to drive the scientific, technological, and strategic development of our cutting‑edge automation capabilities. As a Senior Automation Scientist, you will design, implement, and maintain automated workflows for synthesis, purification, and analysis. You will collaborate with scientists, automation engineers, and IT teams to orchestrate multi‑instrument systems and develop robust processes across leading liquid‑and solid‑handling and analytical platforms. You will play a key role in advancing innovative solutions that continuously improve the efficiency of in‑house workflows. Ready to make an impact with automation‑driven science?

This position is part time eligible with 80 %.

The Position

Join our Medicinal Chemistry team and help shape the future of laboratory automation in drug discovery. We are looking for a passionate and innovative Senior Automation Scientist to drive the scientific, technological, and strategic development of our cutting‑edge automation capabilities. As a Senior Automation Scientist, you will design, implement, and maintain automated workflows for synthesis, purification, and analysis. You will collaborate with scientists, automation engineers, and IT teams to orchestrate multi‑instrument systems and develop robust processes across leading liquid‑and solid‑handling and analytical platforms. You will play a key role in advancing innovative solutions that continuously improve the efficiency of in‑house workflows. Ready to make an impact with automation‑driven science?

Discover our Biberach site: xplorebiberach.com

This position is part time eligible with 80 %.

Tasks & responsibilities

• In your new role, you will design, implement, and maintain orchestration workflows for integrated automation platforms, including scheduler‑driven systems, coordinating robotic systems, liquid and solid handlers, analytical instruments, and data systems, covering the entire MAKE cycle from synthesis planning to compound registration
• Your expertise in laboratory automation enables you to design end‑to‑end data flow concepts and define the requirements for digital interfaces between automation systems and enterprise data platforms (e.g., ELN, LIMS, data lakes, APIs), ensuring seamless and scalable management of experimental data
• You will shape the future automation landscape by designing process architectures, defining system and integration requirements, and guiding the development of scalable orchestration concepts for data‑driven laboratory workflows
• You will collaborate closely with chemists, engineers, data scientists, IT and cross‑functional teams to translate research challenges into physical prototypes, automated workflows, communicate automation outputs effectively, and translate predictive insights into actionable synthesis and experimental recommendations
• Moreover, you will continuously monitor scientific literature and emerging methods in laboratory automation, physical prototyping, orchestration platforms, liquid handling, analytical instruments and digital lab integration, incorporating state‑of‑the‑art approaches into our automation and data infrastructure to maintain a leading‑edge capability

Requirements

• Master’s degree in chemistry or related field with > 5 years of experience in laboratory automation, robotics or engineering, and basic knowledge of synthetic organic chemistry
• Hands‑on expertise in liquid handler programming, lab orchestration and scripting spanning multiple major platforms (e.g., Hamilton, Tecan, BioNex, Opentrons)
• Proficiency in modern programming/scripting languages, particularly Python; experience with system integration, APIs, and data interfaces in laboratory environments
• Understanding of drug discovery workflows and laboratory processes; strong troubleshooting and problem‑solving capabilities in complex automation systems
• Excellent communication skills with the ability to work effectively in multidisciplinary and cross‑functional teams
• Fluent English language skills, both written and spoken; German is a plus

As part of our commitment to transparency and fairness, salary information will be shared during the recruitment process. We also offer a comprehensive benefits and wellbeing package.

Applications from people with severe disabilities are warmly welcomed. In cases of equal qualifications, such applicants will be given preferential consideration in the selection process.

Ready to contact us?

If you have any questions about the job posting or process - please contact our HR Direct Team, Tel: [phone] or via mail: [e-mail]

Recruitment process:

Step 1: Online application - The job posting is presumably online until November 26th, 2026. We reserve the right to take the posting offline beforehand. Step 2: Virtual meeting in the period from mid till end of November Step 3: On‑site interviews beginning of January 2027

Please submit your application documents in English.

Our Company

Boehringer Ingelheim is a biopharmaceutical company active in both human and animal health. As one of the industry's top investors in research and development, the company focuses on developing innovative therapies that can improve and extend lives in areas of high unmet medical need. Independent since its foundation in 1885, Boehringer takes a long‑term perspective, embedding sustainability along the entire value chain. Our approximately 54,300 employees serve over 130 markets to build a healthier and more sustainable tomorrow. Learn more at www.boehringer-ingelheim.com.

Why Boehringer Ingelheim?

With us, you can develop your own path in a company with a culture that knows our differences are our strengths - and break new ground in the drive to make millions of lives better.

Here, your development is our priority. Supporting you to build a career as part of a workplace that is independent, authentic and bold, while tackling challenging work in a respectful and friendly environment where everyone is valued and welcomed.

Alongside, you have access to programs and groups that ensure your health and wellbeing are looked after - as we make major investments to drive global accessibility to healthcare. By being part of a team that is constantly innovating, you'll be helping to transform lives for generations.

Want to learn more? Visit https://www.boehringer-ingelheim.com