Postdoc (m/f/d) – Translational Cancer Research | Gastroenterology

Universitätsklinikum der Technischen Universität München AöR; München; Vor Ort; EUR 52.000 - 69.000; Vollzeit

Benefits dieser Stelle

TV-L salary

EGYM Wellpass

Company pension (VBL)

Cafeteria

Sports and cultural offers

Modern workplace in Munich

Zusammenfassung

Universitätsklinikum der Technischen Universität München AöR invites applications for a Postdoctoral Researcher in Translational Cancer Research within the Gastroenterology division. The role focuses on deciphering tumor evolution, cellular plasticity, and therapy resistance in GEAC by integrating longitudinal clinical trial samples with multi-omics data.

The successful candidate will lead computational analyses, develop pipelines, and collaborate with clinicians and international researchers to

Qualifikationen

• PhD in Bioinformatics, Computational Biology, Computer Science, Data Science, Biomedical Sciences, Cancer Genomics or related quantitative discipline.
• Strong experience in the analysis of next-generation sequencing data (transcriptomic and/or genomic).
• Excellent programming skills in R and/or Python.
• Experience working in Linux/Unix environments and using reproducible computational workflows.
• Ability to independently design and drive scientific projects.
• Excellent communication skills and proficiency in English.

Aufgaben

• Investigate molecular mechanisms of tumor evolution, cellular plasticity and therapy resistance in GEAC using longitudinal multi-omics data.
• Focus on computational analysis and interpretation of large-scale molecular datasets.
• Analyze and integrate single-cell and spatial transcriptomic datasets to characterize tumor evolution and treatment response.
• Infer tissue-specific gene expression and tumor activity from plasma cell-free DNA fragmentation patterns.
• Develop computational approaches for integrating genomic, transcriptomic, epigenomic and immune profiling data.
• Implement multi-omics pipelines and collaborate with clinicians, biologists and international partners.

Kenntnisse

R & Python

NGS data analysis

Linux/Unix

Independent researcher

English communication

Ausbildung

PhD in Bioinformatics/Computational Biology

Jobbeschreibung

Postdoc (m/f/d) – Translational Cancer Research | Gastroenterology

Full- or part-time | temporary (36 months) | Klinik und Poliklinik für Innere Medizin II, Gastroenterologie

The Department of Internal Medicine II at TUM Klinikum rechts der Isar is recruiting a highly motivated Postdoctoral Researcher to join our newly established Max Eder Research Group.

Our research aims to decipher the molecular mechanisms of tumor evolution, cellular plasticity, and therapy resistance in gastric and gastroesophageal adenocarcinoma (GEAC). By integrating longitudinal patient samples from prospective clinical trials with cutting-edge multi-omics technologies and functional model systems, our group is committed to understanding the biological mechanisms underlying treatment resistance in upper gastrointestinal cancers and translating these discoveries into novel therapeutic strategies.

The position offers the unique opportunity to work at the interface of clinical oncology, cancer genomics, computational biology, and functional cancer research within an outstanding translational research environment.

Your responsibilities:

You will investigate the molecular mechanisms of tumor evolution, cellular plasticity, and therapy resistance in GEAC through the integration of longitudinal multi-omics datasets from prospective clinical trial samples.

Your research will focus on computational analysis and interpretation of large-scale molecular datasets, including:

• Analysis and integration of single-cell and spatial transcriptomic datasets to characterize tumor evolution and treatment response
• Inference of tissue‑specific gene expression and tumor activity from plasma cell‑free DNA fragmentation patterns
• Development of computational approaches for the integration of genomic, transcriptomic, epigenomic and immune profiling data
• Multi‑omics integration to reconstruct tumor evolutionary trajectories and characterize cellular plasticity during treatment
• Development and implementation of bioinformatic pipelines for high‑dimensional sequencing datasets
• Close collaboration with clinicians, biologists, computational biologists and international collaborators
• Presentation of research at international conferences and publication in high‑impact scientific journals

Your profile:

We are seeking an ambitious computational scientist with a strong interest in translational cancer research and multi‑omics data analysis.

Required qualifications

• PhD in Bioinformatics, Computational Biology, Computer Science, Data Science, Biomedical Sciences, Cancer Genomics or a related quantitative discipline
• Strong experience in the analysis of next‑generation sequencing data (e.g. transcriptomic and/or genomic datasets)
• Excellent programming skills in R and/or Python
• Experience working in Linux/Unix environments and using reproducible computational workflows
• Ability to independently design and drive scientific projects
• Excellent communication skills and proficiency in English

Preferred qualifications

• Experience in one or more of the following areas is highly desirable:
• Cell‑free DNA sequencing and fragmentation analysis (highly desirable)
• Single‑cell RNA sequencing analysis and/or Spatial transcriptomics
• Multi‑omics integration
• Machine learning or statistical modelling of biological datasets
• Cancer genomics and tumor evolution

We offer you:

• A postdoctoral position within a newly established and rapidly growing Max Eder Research Group funded by the German Cancer Aid
• An outstanding translational research environment embedded within TUM Klinikum rechts der Isar, one of Europe’s leading academic medical centers
• Close collaboration with internationally renowned research groups at the Institute of Cancer Research (ICR), Sutton, UK, and Chalmers University of Technology, Gothenburg, Sweden, including opportunities for scientific exchange and short‑term research stays at both partner institutions.
• Direct integration with prospective clinical trials and longitudinal patient cohorts
• Close collaboration with physicians, computational biologists and internationally recognized research partners
• Strong mentorship and excellent opportunities for scientific independence and career development
• Support for national and international conference attendance
• Competitive salary according to TV‑L
• EGYM Wellpass, corporate benefits, company pension scheme (VBL), cafeteria, sports and cultural offers
• Modern workplace in the heart of Munich with excellent public transport connections

We look forward to your application!

Contact: Dr. Melissa Barroux | 089 / 4140 –2251 | Klinik und Poliklinik für Innere Medizin II, Gastroenterologie

Klinik und Poliklinik für Innere Medizin II, Gastroenterologie

TUM KlinikumRechts der IsarIsmaninger Straße 2281675 München

If the candidates’ suitability for the position in question is equal, severely disabled applicants shall be given preference.

Interview‑related costs can, unfortunately, not be reimbursed.