Sr. Software Integration Engineer

Ultima Genomics; Hayward (CA); Remote; USD 120,000 - 160,000; Full time

Benefits offered by this job

Medical insurance

Dental insurance

Vision insurance

Life and disability insurance

401(k)

FSAs/HSA

Paid holidays

Paid time off

Employee assistance program

Job summary

Ultima Genomics seeks a Senior Software Integration Engineer for a fully remote role with a preferred SF Bay Area location. You will design AI-driven integration agents, orchestrate release and deployment, and build a reliable knowledge base across the software estate.

You will collaborate across teams, integrate with Jira, Confluence, GitHub, Microsoft 365, and Monday.com, and identify automation opportunities to improve deployment and testing processes.

Qualifications

• BS/BA in computer science or an engineering discipline.
• 5+ years of software engineering experience, including automation or workflow orchestration.
• Proficiency in shell scripting and Python in a Linux environment.
• Experience building AI agents or LLM-powered apps using agent frameworks or LLM APIs.
• Experience integrating with APIs such as Jira, Confluence, GitHub, Microsoft 365, or Monday.com.
• Understanding of software release, QA, and deployment processes is a plus.
• Experience with AWS cloud computing is desirable.
• Excellent written and verbal communication, and collaboration across teams.

Responsibilities

• Design, build, and maintain AI agents and automated workflows for software availability, release readiness, testing, and deployment across components.
• Build and maintain a structured knowledge base as the single source of truth for the software estate.
• Integrate with Atlassian tools, GitHub, Microsoft 365, Monday.com, and internal systems.
• Create connectors and middleware to automate data exchange and handoffs between systems.
• Identify and pursue automation opportunities in software management.
• Perform other duties as assigned.

Skills

Software engineering

Shell scripting

Python

AI agents

APIs integration

Cloud AWS

Cross-team collaboration

Communication skills

Education

BS in CS/Engineering

Tools

Jira

Confluence

GitHub

Microsoft 365

Monday.com

Job description

Rapidly Growing Life Sciences Technology Company

Ultima Genomics is a rapidly growing company that is developing ground-breaking genomics technologies. Our mission is to continuously drive the scale of genomic information to enable unprecedented advances in biology and improvements in human health. We have developed a foundational new approach to sequencing at scale that overcomes limitations due to the high costs of current technologies. We are well-funded and have raised over $700 million from global top-tier investors and partners who share our vision. Our team brings together unique and diverse expertise across multiple disciplines, from healthcare and life sciences, to engineering, to technology and software and beyond. We are a collaborative group, including successful entrepreneurs, chemists, hardware and software engineers, genomics and biotechnology experts, molecular and computational biologists, software and algorithm experts, and operations and commercial leaders. Join us to develop and commercialize technologies that unleash the power of genomics at scale and empower the future of human health.

We are looking for a highly motivatedSenior Software Integration Engineer to join our team!

As a Senior Software Integration Engineer, you will design and build agents and automated solutions for software integration, testing, release and deployment processes, and will create an authoritative software knowledge base resource for the organization. The ideal candidate is a builder who can translate ambiguous processes into reliable automated systems, and a systems thinker who can turn complex technical information into clear, discoverable structure.

This is a full‑time remote position with a preferred location in SF Bay Area.

How You'll Contribute

• Design, build, and maintain AI agents and automated workflows that track software availability, release readiness, testing, and deployment status across many individual software components. Ensure robust orchestration, error handling, and observability to surface failures and edge cases
• Build and maintain a structured knowledge base to serve as the single source of truth for the software estate that can be queried by agents
• Integrate with Atlassian tools (Jira, Confluence), GitHub, Microsoft 365 (Teams, Copilot), Monday.com, and internal systems
• Build connectors and middleware between AI agents and internal or third‑party systems as needed to automate data exchange and process handoffs
• Independently identify and execute on automation opportunities in software management
• Other job duties as assigned

Qualifications, Skills, Knowledge & Abilities

• BS/BA in computer science or an engineering discipline
• 5+ years of software engineering experience, including experience building and maintaining automation or workflow orchestration systems
• Proficiency in shell scripting and at least one high-level programming language such as Python in a Linux environment
• Experience building AI agents or LLM‑powered applications using agent frameworks or LLM APIs, including tool use and orchestration
• Experience integrating with APIs such as Atlassian (Jira, Confluence), GitHub, Microsoft 365 (Teams, Copilot), or Monday.com
• Understanding of software release, QA, and/or deployment processes is a plus
• Experience with cloud computing infrastructure such as AWS is desirable
• Excel in collaborating both within and across teams
• Excellent written and verbal communication skills

At Ultima Genomics, your base pay is one part of your total compensation package. This role pays between $120,000 and $160,000, if performed in the US, and your actual base pay will depend on your skills, qualifications, experience, and location. Please note that the compensation details listed in US role postings reflect the base salary only, and do not include bonus, equity, or benefits. This role is also eligible for a competitive benefits package that includes: medical, dental, vision, life, and disability insurance; 401(k) retirement plan; flexible spending & health savings account; paid holidays; paid time off; employee assistance program; and other company benefits.

Ultima Genomics is proud to be an equal opportunity workplace and is an affirmative action employer. We provide equal employment opportunity for all applicants and employees. We do not discriminate on the basis of race, color, religion, sex (including pregnancy, childbirth, or related medical conditions), gender identity, gender expression, national origin, ancestry, citizenship, age, physical or mental disability, military or veteran status, marital status, domestic partner status, sexual orientation, genetic information, or any other basis protected by applicable laws. See also Ultima Genomics' EEO Policy and Know Your Rights . If you have a disability or special need that requires accommodation, please let us know by contacting [e-mail] .

Voluntary Self-Identification

For government reporting purposes, we ask candidates to respond to the below self-identification survey.Completion of the form is entirely voluntary. Whatever your decision, it will not be considered in the hiringprocess or thereafter. Any information that you do provide will be recorded and maintained in aconfidential file.

As set forth in Ultima Genomics's Equal Employment Opportunity policy,we do not discriminate on the basis of any protected group status under any applicable law.

If you believe you belong to any of the categories of protected veterans listed below, please indicate by making the appropriate selection.As a government contractor subject to the Vietnam Era Veterans Readjustment Assistance Act (VEVRAA), we request this information in order to measurethe effectiveness of the outreach and positive recruitment efforts we undertake pursuant to VEVRAA. Classification of protected categoriesis as follows:

A "disabled veteran" is one of the following: a veteran of the U.S. military, ground, naval or air service who is entitled to compensation (or who but for the receipt of military retired pay would be entitled to compensation) under laws administered by the Secretary of Veterans Affairs; or a person who was discharged or released from active duty because of a service-connected disability.

A "recently separated veteran" means any veteran during the three-year period beginning on the date of such veteran's discharge or release from active duty in the U.S. military, ground, naval, or air service.

An "active duty wartime or campaign badge veteran" means a veteran who served on active duty in the U.S. military, ground, naval or air service during a war, or in a campaign or expedition for which a campaign badge has been authorized under the laws administered by the Department of Defense.

An "Armed forces service medal veteran" means a veteran who, while serving on active duty in the U.S. military, ground, naval or air service, participated in a United States military operation for which an Armed Forces service medal was awarded pursuant to Executive Order 12985.