Sr Bioinformatics Scientist

Weingart Foundation; San Diego (CA); Hybrid; USD 126,000 - 191,000; Full time

Job summary

A leading company in genomic technology is seeking a Senior Bioinformatics Scientist to join their team in San Diego. The ideal candidate will drive the development of sequencing technologies and implement quality assessment pipelines. This role offers a unique opportunity to impact health equity through innovative genomic solutions while working in a collaborative environment.

Benefits

Access to genomics sequencing

Health/dental/vision benefits

Retirement benefits

Paid time off

Cash bonus programs

Qualifications

• Strong understanding of next-generation sequencing technologies.
• Experience in programming languages like Python or R.
• Minimum 3 years of related experience required.

Responsibilities

• Plan and execute quality assessments for sequencing technologies.
• Design, deploy, and optimize pipelines for data assessment.
• Translate analysis results into actionable recommendations.

Skills

Programming skills

Data analysis

Bioinformatics algorithms

Statistical concepts

Education

Masters/PhD in bioinformatics, computer science, data science, engineering, mathematics

Tools

Unix/Linux

High Performance Computing (HPC)

Cloud environments (AWS)

Nextflow

Docker

Job description

What if the work you did every day could impact the lives of people you know? Or all of humanity?

At Illumina, we are expanding access to genomic technology to realize health equity for billions of people around the world. Our efforts enable life-changing discoveries that are transforming human health through the early detection and diagnosis of diseases and new treatment options for patients.

Working at Illumina means being part of something bigger than yourself. Every person, in every role, has the opportunity to make a difference. Surrounded by extraordinary people, inspiring leaders, and world changing projects, you will do more and become more than you ever thought possible.

The Senior Bioinformatics Scientist will work in a collaborative, cross-functional environment to drive the development of existing and new sequencing technologies. In this role, they will design and implement pipelines for data quality assessment, provide actionable insights from experimental data, and contribute to defining Illumina's R&D data quality and product strategy.

Responsibilities:

• Plan and execute quality assessments for existing and novel sequencing technologies.
• Collaborate with subject matter experts across R&D functions to understand, define, and communicate sequencing technology requirements for research and clinical applications.
• Design, deploy, and optimize pipelines for secondary analysis and quality assessment of sequencing data.
• Contribute to the development of automated testing infrastructure.
• Drive the analysis, integration, modeling, and interpretation of experimental data.
• Translate complex analysis results into actionable recommendations for technology development and improvement. Present results clearly and effectively to both technical and non-technical stakeholders.
• Stay current on the latest publications and relevant research and identify established methods that should be incorporate into method development.

Requirements:

• Strong understanding of next-generation sequencing technologies and their underlying principles.
• Proficient programming skills with experience in one or more languages, such as Python or R.
• Experience working with Unix/Linux and High Performance Computing (HPC) environments.
• Proficiency with common bioinformatics algorithms and methods. Hands on experience of quality control and analysis of data generated from a variety of omics, such as WGS, scRNA, somatic profiling, proteomics, methylation, etc.
• Solid understanding of statistical and biological concepts; strong data analysis and visualization skills.
• Strong data analysis and visualization skills.

Desired:

• Experience working with cloud environments (e.g., AWS).
• Experience with workflow management languages, such as Nextflow, WDL, etc.
• Familiarity with containerization tools, such as Docker, and similar technologies.
• Excellent communication skills and a proven track record of collaborating with diverse teams.

Education:

• Masters/PhD in bioinformatics, computer science, data science, engineering, mathematics or equivalent
• Typically requires a minimum of 3 years of related experience with a Master's degree; or a PhD with 0-3 years of experience; or equivalent experience

#LI-HYBRID

The estimated base salary range for the Sr Bioinformatics Scientist role based in the United States of America is: $126,800 - $190,200. Should the level or location of the role change during the hiring process, the applicable base pay range may be updated accordingly. Compensation decisions are dependent on several factors including, but not limited to, an individual's qualifications, location where the role is to be performed, internal equity, and alignment with market data. Additionally, all employees are eligible for one of our variable cash programs (bonus or commission) and eligible roles may receive equity as part of the compensation package. We offer a wide range of benefits as innovative as our work, including access to genomics sequencing, family planning, health/dental/vision, retirement benefits, and paid time off.

We are a company deeply rooted in belonging, promoting an inclusive environment where employees feel valued and empowered to contribute to our mission. Built on a strong foundation, Illumina has always prioritized openness, collaboration, and seeking alternative perspectives to propel innovation in genomics. We are proud to confirm a zero-net gap in pay, regardless of gender, ethnicity, or race. We also have several Employee Resource Groups (ERG) that deliver career development experiences, increase cultural awareness, and offer opportunities to engage in social responsibility. We are proud to be an equal opportunity employer committed to providing employment opportunity regardless of sex, race, creed, color, gender, religion, marital status, domestic partner status, age, national origin or ancestry, physical or mental disability, medical condition, sexual orientation, pregnancy, military or veteran status, citizenship status, and genetic information. Illumina conducts background checks on applicants for whom a conditional offer of employment has been made. Qualified applicants with arrest or conviction records will be considered for employment in accordance with applicable local, state, and federal laws. Background check results may potentially result in the withdrawal of a conditional offer of employment. The background check process and any decisions made as a result shall be made in accordance with all applicable local, state, and federal laws. Illumina prohibits the use of generative artificial intelligence (AI) in the application and interview process. If you require accommodation to complete the application or interview process, please contact [e-mail]. To learn more, visit: https://www.dol.gov/ofccp/regs/compliance/posters/pdf/eeopost.pdf. The position will be posted until a final candidate is selected or the requisition has a sufficient number of qualified applicants. This role is not eligible for visa sponsorship.