Senior Image Data Scientist-Center for Bioimage Informatics

St. Jude Children's Research Hospital; Memphis, Northern (TN, KY); Hybrid; USD 86,000 - 155,000; Full time

Job summary

St. Jude Children's Research Hospital in Memphis, TN invites applications for a Senior Image Data Scientist in the Center for Bioimage Informatics.

You will design, develop, validate, and operate image-analysis pipelines and visualization tools for biomedical imaging research. The successful candidate will collaborate with investigators, software engineers, data scientists, and biostatisticians to translate scientific questions into scalable, reproducible workflows, while contributing to shared

Qualifications

• Bachelor's degree in applied mathematics, physics, chemistry, bioinformatics, computer science, data science, computer engineering or related field required.
• PhD preferred; strong background in bioimage informatics.
• Experience building image-analysis pipelines for biomedical imaging data.
• Experience with Python and computer vision, ML/DL, or statistical imaging methods.
• Experience with AI methods for bioimage analysis including vision transformers, LLMs.
• Experience with reproducible scientific workflows (Snakemake/Nextflow), containers, HPC or cloud environments.
• Hands-on with napari, ImageJ/Fiji, Cellpose, SAM-family, BioFormats, OME-Zarr/NGFF.
• Experience with large image data volumes and data management.
• Ability to communicate results and train researchers; write user docs.

Responsibilities

• Design, develop, validate, document, and operate image-analysis pipelines and visualization solutions for biomedical imaging research.
• Collaborate with investigators, software engineers, data scientists, imaging facility scientists, and biostatisticians to translate scientific questions into reproducible, scalable analysis workflows.
• Provide technical consultation and training to research teams and serve as project lead coordinating image-analysis efforts.

Skills

Python

Machine learning

Deep learning

Bioimage analysis

Statistical methods

Scientific communication

Education

PhD in relevant field

Master's preferred

Bachelor's degree in related field

Tools

napari

ImageJ/Fiji

Cellpose

OME-NGFF

HPC

Snakemake

Nextflow

Job description

Senior Image Data Scientist-Center for Bioimage Informatics

Location

Memphis, TN

Category

Computational Sciences

Department

Scientific Director's Office

Shift

Weekday Day

Position Type

Full Time

Scheduled Weekly Hours

40

JR6953

Job Description

The Center for Bioimage Informatics at St. Jude Children's Research Hospital is seeking two Senior Image Data Scientists to design, develop,validate, document, and operate image-analysis pipelines and visualization solutions for biomedical imaging research. This role works closely with investigators, software engineers, data scientists, imaging facility scientists, and biostatisticians to translate scientific questions into reproducible, scalable analysis workflows using modern image analysis, statistical, computer vision, and machine learning approaches

The successful candidate will support image data management, maintain analysis software and repositories, evaluate new methods and tools, and provide technical consultation and training to research teams. This role also serves as a project lead to coordinate image-analysis efforts, align related projects, and contribute to shared CBI infrastructure that supports routine and advanced bioimage analysis.

Applicant Statement:

Applicants are encouraged to include a brief cover letter or supplemental statement with a link to representative work, such as a public repository, napari plugin, published pipeline, or comparable artifact. The statement should briefly describe one end-to-end image-analysis project or software tool the applicant has owned in production, including the biological or scientific question, data scale, methods or model used, pipeline design, validation approach, user adoption, and resulting impact.

Preferred Qualifications:

• PhD in a relevant quantitative, computational, biomedical, or scientific field.

• Experience developing, validating, and maintaining image-analysis pipelines for biological or medical imaging data.

• Strong programming skills in Python and experience with modern computer vision, machine learning, deep learning, or statistical image-analysis methods.

• Experience with emerging AI methods relevant to bioimage analysis, including vision transformers, foundation models, generative AI, large language models (LLMs), or agentic AI tools.

• Experience with scalable and reproducible scientific workflows (e.g., Snakemake, Nextflow), containers, version control, and HPC or cloud environments.

• Demonstrated experience using modern bioimaging tools, data standards, and open-source ecosystems such as napari, ImageJ/Fiji, Cellpose, SAM-family and related foundation segmentation models, QuPath, BioFormats, OME-Zarr/NGFF, or similar platforms.

• Experience with large image data volumes, image data management, quality control, benchmarking, annotation strategies, and method evaluation.

• Demonstrated ability to collaborate with research teams, communicate technical results clearly, write user-facing documentation, and provide training through courses, workshops, seminars, or similar formats.

• Evidence of technical leadership, such as leading multi-lab projects, contributing to shared infrastructure, publishing methods, or contributing to open-source scientific software.

Minimum Education and/or Training:

• Bachelor's degree in applied mathematics, physics, chemistry, bioinformatics, computer science, data science, computer engineering or related field required.

• Master's degree preferred.

Minimum Experience:

• Minimum Requirement: Bachelor's degree with 3+ years of work experience in relevant area (e.g., applied mathematics, physics, chemistry, bioinformatics, computer science, data science, computer engineering) required.

• Experience Exception: Master's degree with 1+ years of relevant experience.

• Experience in image analyses, image data management, and programming (e.g., Python, R, Matlab, Java, C/C++).

• Experience in image analysis platforms (e.g., ImageJ/Fiji, CellProfiler), scientific computing, scientific data visualization, scientific computer code optimization and evaluation in an HPC environment, development of algorithms, statistical methods or scientific software, working with large image data volumes, biological/medical imaging preferred.

• Proven performance in earlier role/comparable role.

Compensation

In recognition of certain U.S. state and municipal pay transparency laws, St. Jude is including a reasonable estimate of the compensation range for this role. This is an estimate offered in good faith and a specific salary offer takes into account factors that are considered in making compensation decisions including but not limited to skill sets, experience and training, licensure and certifications, and other business and organizational needs. It is not typical for an individual to be hired at or near the top of the salary range and compensation decisions are dependent on the facts and circumstances of each case. A reasonable estimate of the current salary range is $86,320 - $154,960 per year for the role of Senior Image Data Scientist-Center for Bioimage Informatics.

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St. Jude is an Equal Opportunity Employer

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