Senior Bioinformatics Software Developer II

Fulgent Genetics; El Monte (CA); On-site; USD 130,000 - 170,000; Full time

Job summary

Fulgent Genetics seeks a Senior Bioinformatics Software Developer II to design, implement, and support large-scale bioinformatics pipelines and data systems. You will lead technical decisions, mentor developers, and collaborate with analysts to deliver scalable software aligned with business goals.

You will oversee tool maintenance, performance optimization, and code quality while contributing to scientific and technical publications as applicable.

Qualifications

• A Bachelor's Degree with a major in Bioinformatics, Computer Science, or related discipline.
• Experience with software design, implementation, and deployment of enterprise application software.
• Knowledge of Java, JavaScript, .NET, Python, Bash Scripts.
• Knowledge of Database, SQL.
• Knowledge of GIT Source Control, Windows, and Linux.
• Ability to handle periodic on-call duty as well as out-of-band requests.
• Understanding of Requirements Analysis.
• Strong written and verbal communication skills.

Responsibilities

• Lead design and implementation of robust, scalable bioinformatics workflows.
• Translate biological questions into computational solutions with stakeholders.
• Maintain and extend existing tools and refactor legacy pipelines.
• Perform code reviews, unit testing, and documentation.
• Support data analysts and scientists with technical troubleshooting.
• Contribute to publications, whitepapers, or validation reports if applicable.
• Architect, develop, test, and maintain Bioinformatics Pipeline Systems.
• Research and develop new algorithms to improve pipeline efficiency.
• Manage data, databases, and system administration tasks.
• Identify and implement process improvements for automation and scalability.
• Build analytics tools using the data pipeline to derive business insights.
• Support operations, processing, and exception handling.
• Design and maintain database schemas and services.
• Oversee system administration and ongoing maintenance.

Skills

Java

JavaScript

.NET

Python

Bash Scripts

GIT

Windows

Linux

Requirements Analysis

Communication

Education

Bachelor's Degree in Bioinformatics, Computer Science, or related discipline

Tools

BWA

R

Picard

GATK

Scala

AWS

NoSQL

Apache Spark

Java RESTful services

XML

Job description

About Us

Founded in 2011, Fulgent has evolved into a premier, full-service genomic testing company built around a foundational technology platform.

Through our diverse testing menu, Fulgent is focused on transforming patient care in oncology, anatomic pathology, infectious and rare diseases, and reproductive health. We believe that by providing a wide range of effective, flexible testing options in conjunction with best-in-class service and support, we can redefine the way medicine is managed for patients and clinicians alike.

Since integrating with our therapeutic development business, Fulgent is also developing drug candidates for treating a broad range of cancers using a novel nanoencapsulation and targeted therapy platform. By merging our fields of expertise, we aim to become a fully integrated precision medicine company.

Summary of Position

The Senior Bioinformatics Software Developer II will have demonstrated knowledge and interest in Software Development, Bioinformatics, Data Engineering, Data Science and AI. They will architect, implement, and support the following: data pipelines, database management, analysis tools, and user interfaces for large-scale bioinformatics software solutions. They will provide technical leadership to the development team, drive key technical decisions, demonstrate strong problem-solving abilities, mentor junior developers and play a key role in delivering high-quality software solutions that align with business objectives.

Key Job Elements

• Lead the design and implementation of robust, scalable bioinformatics workflows.
• Work with stakeholders to gather requirements and translate biological questions into computational solutions.
• Maintain and extend existing tools - refactor or modernize legacy pipelines.
• Perform code reviews, unit testing, and documentation.
• Support data analysts and scientists with technical troubleshooting.
• Contribute to scientific publications, technical whitepapers, or validation reports if applicable.
• Architect, develop, test, and maintain Bioinformatics Pipeline Systems.
• Research and develop new algorithms and programs to support and improve the Bioinformatics system's efficiency.
• Data management, data maintenance, and database administration.
• Identify, design, and implement process improvements: automating manual processes, optimizing data delivery, re-designing infrastructure for greater scalabilities.
• Build analytics tools that utilize the data pipeline to provide actionable insights into customer acquisition, operational efficiency, and other key business performance metrics.
• Supporting business operations, processing, and exceptions.
• Database design, analysis, implementation, and support.
• System administration and maintenance.

Qualifications

Knowledge/Experience

• A Bachelor's Degree with a major in Bioinformatics, Computer Science, or a related discipline.
• Experience with software design, implementation, and deployment of enterprise application software.
• Knowledge of Java, JavaScript, .NET, Python, Bash Scripts.
• Knowledge of Database, SQL.
• Knowledge of GIT Source Control, Windows, and Linux.
• Ability to handle periodic on-call duty as well as out-of-band requests.
• Understanding of Requirements Analysis.
• Strong written and verbal communication skills.

Additional Skills

• Deep understanding of Programming Languages, Algorithms, and Data Analysis.
• Understanding of Bioinformatics, Genetics, Biology.
• Enjoy working in a highly collaborative and fast-pace environment on high-impact, open source software development. Prior experience in health informatics is a plus.
• Experience with next-generation sequencing (NGS).
• Experience with BWA, R, Picard, and GATK and other Bioinformatics tools.
• Experience with Scala, AWS, NoSql, Statistics, big data, Apache Spark.
• Experience with Java RESTful services, JavaScript, and XML; user and design documentation to support open-source products.
• Experience with Agile/Scrum software development methodologies.

Supervisory Responsibilities

• Yes

Reports To

• Director of Biointegration

Environment

Fulgent Therapeutics LLC is an Equal Employment Opportunity Employer.

The work environment characteristics described here are representative of those an employee encounters while performing the essential functions of this job. Reasonable accommodations may be made to enable qualified individuals with disabilities to perform the essential functions. The term "qualified individual with a disability" means an individual with a disability who, with or without reasonable accommodation, can perform the essential functions of the position.

For California residents, please see the link below to access our CCPA Privacy Notice.

CCPA Privacy Notice for California Residents

https://tinyurl.com/FulgentCCPA

Please note that Fulgent (and its affiliated companies, including Inform Diagnostics and CSI Laboratories) does not accept unsolicited information and/or resumes from search firms or agencies for our job postings. Search firms or agencies without an applicable contract and/or express approval to recruit for the role in question - that choose to submit a resume or client information to our career page or to any employee of Fulgent - will not be eligible for payment of any fee(s), and any associated shared data will become the property of Fulgent.