Senior Bioinformatics Engineer II

Moderna; Massachusetts; On-site; USD 146,000 - 234,000; Full time

Benefits offered by this job

Competitive healthcare

Well-being resources

Paid time off

Location-specific perks and extras

Job summary

Moderna is seeking a senior software and bioinformatics specialist to monitor and improve critical pipelines that support scientific and operational goals. You will work across disciplines to design automated tests, validate systems, and ensure continuous operation of bioinformatics platforms.

You will collaborate with bioinformatics and software engineers, participate in validation activities, and help implement automation, documentation, and on-call incident response.

Qualifications

• Bachelor’s degree and 10+ years of relevant work experience.
• Strong programming skills in Python and Linux.
• Excellent problem-solving and analytical skills.
• Experience with bioinformatics workflow frameworks (Nextflow, Snakemake, Luigi) and version control (Git); cloud (AWS) and containers (Docker).
• Experience with Computer System Validation processes.
• Experience in a GxP environment and regulatory compliance knowledge.

Responsibilities

• Monitor bioinformatics pipelines and scientific software to identify deviations and recommend corrective actions.
• Support development and implementation of standards, methods, and procedures for software quality and readiness.
• Collaborate with bioinformatics and software engineering teams to design and enhance automated testing for continuous operation.
• Monitor and maintain scientific software platforms for reliable performance.
• Troubleshoot, investigate, resolve, or annotate software and operational issues for incident management.
• Support computer system validation through scripts, protocols, and documentation.
• Work with development teams to identify defects, resolve bugs, and implement improvements.
• Provide on-call support to address urgent issues and minimize downtime.
• Develop and maintain documentation on troubleshooting, investigations, resolutions, and procedures.
• Improve error reporting apps to increase visibility and reliability.
• Expand knowledge of scientific software platforms and supporting infrastructure.
• Contribute to a culture of operational excellence, compliance, and high-quality software delivery.

Skills

Python

Linux

Analytical skills

Independent work

Team collaboration

Education

Bachelor’s degree in Computer Science, Engineering, or related field

Tools

Nextflow

Snakemake

Luigi

Git

AWS

Docker

Job description

The Role

Joining Moderna means advancing mRNA science to transform medicine. Work with exceptional global teams on a broad pipeline and build a career that makes a real difference for patients.

Moderna is strengthening its international business services hub in Warsaw, supporting our growing global operations. We welcome professionals ready to help advance our mission and shape the future of mRNA medicines.

In this role, you will help ensure the reliability, quality, and compliance of critical bioinformatics pipelines that support Moderna’s scientific and operational objectives. Working at the intersection of bioinformatics, software engineering, validation, and operational support, you will monitor system performance, identify deviations from established standards, and drive continuous improvements across the software ecosystem.

You will play a key role in maintaining continuous software operations, supporting validation activities, enhancing automation capabilities, and collaborating with multidisciplinary teams to strengthen the robustness of scientific software platforms. This position also offers exposure to advanced digital technologies and opportunities to work alongside teams leveraging automation, data-driven processes, and emerging Generative AI-enabled solutions to improve operational efficiency.

Here’s What You’ll Do

• Monitor bioinformatics pipelines and scientific software systems to identify deviations from established standards and recommend corrective actions.
• Support the development, refinement, and implementation of standards, methods, and procedures used to assess software quality and operational readiness.
• Collaborate closely with bioinformatics and software engineering teams to design, develop, and enhance automated testing capabilities that support continuous operation of bioinformatics pipelines.
• Monitor and maintain scientific software platforms to ensure reliable and uninterrupted performance.
• Troubleshoot, investigate, resolve, or appropriately annotate software and operational issues to support efficient incident management.
• Support computer system validation activities through the drafting, execution, and maintenance of qualification scripts, protocols, and associated validation documentation.
• Work independently and in partnership with development teams to identify software defects, resolve bugs, and implement system improvements.
• Provide on-call support to address urgent operational issues and minimize downtime.
• Develop, maintain, and continuously improve documentation related to software troubleshooting, issue investigation, issue resolution, and operational procedures.
• Improve and automate error reporting applications to increase visibility, efficiency, and system reliability.
• Continuously expand technical knowledge of scientific software platforms, bioinformatics technologies, and supporting infrastructure.
• Contribute to a culture of operational excellence, continuous improvement, compliance, and high-quality software delivery.

The key Moderna Mindsets you’ll need to succeed in the role:

• “We obsess over learning. We don’t have to be the smartest we have to learn the fastest.”
• “We digitize everywhere possible using the power of code to maximize our impact on patients.”

Here’s What You’ll Need (Minimum Qualifications)

• Bachelor’s degree in Computer Science, Engineering, or a related field and 10+ years of relevant work experience
• Strong programming skills, particularly in Python and Linux
• Excellent problem-solving and analytical skills
• Ability to work independently and as part of a team
• Experience using a bioinformatics workflow framework (e.g. NextFlow, Luigi, Snakemake, NextFlow preferred), version control systems (Git preferred), Cloud (AWS preferred) and containers (Docker preferred)
• Experience with Computer System Validation processes.
• Experience in a GxP environments and knowledge of regulatory compliance requirements

Here’s What You’ll Bring to the Table (Preferred Qualifications)

• Experience with bioinformatics software and an understanding of neoantigen therapies
• Proven experience in software quality assurance and quality control
• Effective time management, organization, and planning skills
• Flexibility; adaptability to frequent change
• Results oriented; ability to manage performance.
• Effective communication, both written and verbal
• Personal and shared accountability
• A desire to make an impact as part of a high-growth, transformational company that is Bold, Relentless, Curious, and Collaborative.

Pay & Benefits

At Moderna, we believe that when you feel your best, you can do your best work. That’s why our benefits and well-being resources are designed to support you—at work, at home, and everywhere in between.

• Competitive healthcare, plus voluntary benefit programs to support your unique needs
• A holistic approach to well-being, with access to fitness, mindfulness, and mental health support
• Family planning benefits, including fertility, adoption, and surrogacy support
• Generous paid time off, including vacation, volunteer days, sabbatical, global recharge days, and a discretionary year-end shutdown
• Savings and investments to help you plan for the future
• Location-specific perks and extras

The salary range for this role is $145,900.00 - $234,200.00. This is the lowest to highest salary we in good faith believe we would pay for this role at the time of this posting. An individual’s position within the salary range will be based on several factors including, but not limited to, specific competencies, relevant education, qualifications, certifications, experience, skills, performance, and business or organizational needs.The successful candidate may be eligible for an annual discretionary bonus, other incentive compensation, or equity award, subject to company plan eligibility criteria and individual performance.

About Moderna

Since our founding in 2010, we have aspired to build the leading mRNA technology platform, the infrastructure to reimagine how medicines are created and delivered, and a world-class team. We believe in giving our people a platform to change medicine and an opportunity to change the world.

By living our mission, values, and mindsets every day, our people are the driving force behind our scientific progress and our culture. Together, we are creating a culture of belonging and building an organization that cares deeply for our patients, our employees, the environment, and our communities.

We are proud to have been recognized as a Science Magazine Top Biopharma Employer, a Fast Company Best Workplace for Innovators, and a Great Place to Work in the U.S.

If you want to make a difference and join a team that is changing the future of medicine, we invite you to visit modernatx.com/careers to learn more about our current opportunities.

Our Working Model

As we build our company, we have always believed an in-person culture is critical to our success. Moderna champions the significant benefits of in-office collaboration by embracing a 70/30 work model. This 70% in-office structure helps to foster a culture rich in innovation, teamwork, and direct mentorship. Join us in shaping a world where every interaction is an opportunity to learn, contribute, and make a meaningful impact.

Moderna is a smoke-free, alcohol-free, and drug-free work environment.

Equal Opportunities

Moderna is committed to equal employment opportunity and non-discrimination for all employees and qualified applicants without regard to a person’s race, color, sex, gender identity or expression, age, religion, national origin, ancestry or citizenship, ethnicity, disability, military or protected veteran status, genetic information, sexual orientation, marital or familial status, or any other personal characteristic protected under applicable law.Moderna is a place where everyone can grow. If you meet the Basic Qualifications for the role and you would be excited to contribute to our mission every day, please apply!

Moderna is an E-Verify Employer in the United States. We consider qualified applicants regardless of criminal histories, consistent with legal requirements.

Accommodations

We’re focused on attracting, retaining, developing, and advancing our employees. By cultivating a workplace that values diverse experiences, backgrounds, and ideas, we create an environment where every employee can contribute their best.

Moderna is committed to offering reasonable accommodations to qualified job applicants with disabilities. Any applicant requiring an accommodation in connection with the hiring process and/or to perform the essential functions of the position for which the applicant has applied should contact the Accommodations team at [e-mail].

Export Control NoticeThis position may involve access to technology or data that is subject to U.S. export control laws, including the Export Administration Regulations (EAR). As such, employment is contingent upon the applicant’s ability to access export-controlled information in accordance with U.S. law. Due to the nature of the work and regulatory requirements, only individuals who qualify as U.S. persons (citizens, permanent residents, asylees, or refugees) are eligible for this position. For this role Moderna is unable to sponsor non-U.S. persons to apply for an export control license.#LI-CK1