Part-Time Programmer Analysts

The Pennsylvania State University; University Park (PA, TX); Remote; USD 60,000 - 100,000; Part time

Job summary

An established industry player is seeking part-time Programmer Analysts to contribute to an NIH-funded project aimed at advancing biomedical data translation. In this role, you'll be developing innovative solutions using Python and machine learning to enhance the ARAX system. You'll collaborate with a diverse team of programmers and scientists to implement cutting-edge techniques that will help in predicting drug efficacy and managing complex biomedical data. This position offers a unique opportunity to work at the intersection of technology and healthcare, making a tangible impact on scientific research and public health.

Qualifications

• Master's degree plus two years of related experience.
• Experience with Neo4j, REST APIs, and Python.

Responsibilities

• Develop components for ARAX system using Python and machine learning.
• Maintain ARAX code base and ensure compliance with API updates.

Skills

Python

Machine Learning

Neo4j

REST APIs

Git

Attention to Detail

Interpersonal Skills

Education

Master's Degree

Tools

GitHub

Scikit Learn

Job description

APPLICATION INSTRUCTIONS:

• CURRENT PENN STATE EMPLOYEE (faculty, staff, technical service, or student), please login to Workday to complete the internal application process. Please do not apply here, apply internally through Workday.

• CURRENT PENN STATE STUDENT (not employed previously at the university) and seeking employment with Penn State, please login to Workday to complete the student application process. Please do not apply here, apply internally through Workday.

• If you are NOT a current employee or student, please click "Apply" and complete the application process for external applicants.

Approval of remote and hybrid work is not guaranteed regardless of work location.For additional information on remote work at Penn State, seeNotice to Out of State Applicants.

JOB DESCRIPTION AND POSITION REQUIREMENTS:

The Department of Computer Science and Engineering is seeking part-time Programmer Analysts to support an NIH National Center for Advancing Translational Science-funded project called: "The Biomedical Data Translator."https://ncats.nih.gov/research/research-activities/translator

These programmers will develop the following components to be incorporated into the ARAX (https://github.com/RTXteam/RTX) system: Implement statistical and machine learning techniques to augment graph edge properties in ARAX; Create modular python wrappers to interface with NCATS (National Center for Advancing Translational Services) translator API (Application Programming Interface) endpoints (https://smart-api.info/registry) and UI (https://ui.transltr.io/) to allow ingestion of open access data into (and from) the ARAX system; Implement automated thresholding of ARAX filtering components; Create a modular, tunable weighting scheme for scoring and ranking of results to be returned by the ARAX system; Train a graph node embedding + random forest model on open access clinical and biomedical data to extend current capabilities for predicting the probability that a drug treats a disease; Maintain the ARAX code base to retain compliance with API and data standardization version updates as specified by the advisory, API, and data modeling committees; Address additional ARAX code-base issues as they are identified and assigned by faculty member.

Requirements include:

• Excellent interpersonal and communication skills
• Strong attention to detail
• Master's degree plus two years of related experience, or an equivalent combination of education and experience
• Specific skills required are experience with the Neo4j graph database, interacting with REST APIs, more than three years' experience with Python, and associated machine learning packages (such as Scikit learn)
• More than three years' experience with Git and GitHub
• Ability to effectively work remotely with a large team of programmers and scientists
• Two years' or more experience working with biomedical ontologies/data sets and publicly available databases

Pay and hours per week negotiable within funder restrictions.Please include a cover letter and resume.

The Pennsylvania State University is committed to and accountable for advancing diversity, equity, inclusion, and sustainability in all of its forms. We embrace individual uniqueness, foster a culture of inclusion that supports both broad and specific diversity initiatives, leverage the educational and institutional benefits of diversity in society and nature, and engage all individuals to help them thrive. We value inclusion as a core strength and an essential element of our public service mission.

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Pursuant to the Jeanne Clery Disclosure of Campus Security Policy and Campus Crime Statistics Act and the Pennsylvania Act of 1988, Penn State publishes a combined Annual Security and Annual Fire Safety Report (ASR). The ASR includes crime statistics and institutional policies concerning campus security, such as those concerning alcohol and drug use, crime prevention, the reporting of crimes, sexual assault, and other matters. The ASR is available for review here.

Employment with the University will require successful completion of background check(s) in accordance with University policies.

EEO IS THE LAW

Penn State is an equal opportunity, affirmative action employer, and is committed to providing employment opportunities to all qualified applicants without regard to race, color, religion, age, sex, sexual orientation, gender identity, national origin, disability or protected veteran status. If you are unable to use our online application process due to an impairment or disability, please contact 814-865-1473.

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