Immunology Data Scientist: Single-Cell & Imaging Analytics

Mount Sinai Health System; New York (NY); On-site; USD 72,000 - 109,000; Full time

Job summary

The Mount Sinai Health System is seeking an Associate Computational Scientist to advance sequencing and imaging data workflows within the MSSM Scientific Computing Group. The role collaborates with researchers to deploy codes on HPC clusters and optimize laboratory data processing pipelines.

Ideal candidates hold a Masters (Ph.D. preferred) with experience in RNA sequencing analysis, bioinformatics, and Linux-based scientific workflows, and can contribute to data curation, analysis, and

Qualifications

• Masters degree or equivalent in a domain science; Ph.D. in a scientific domain preferred.
• Beginner level, with some experience in a scientific/academic computing environment or equivalent preferred.

Responsibilities

• Contribute to setup, management and maintenance of sequencing and imaging data analysis pipelines.
• Manage sequencing and imaging data storage infrastructure.
• Adapt and optimize established internal and external coding workflows to process laboratory data.
• Curate, integrate and analyze internal and external sequencing and imaging data.
• Integrate with computational and biological team members to address needs of laboratory research.
• Work with the software engineering team to ensure pipeline upgrades and new pipelines are properly implemented in laboratory workflow.
• Assist collaborators with data access, analysis, and interpretation.
• Stay current on innovations in RNA sequencing and imaging analysis.

Skills

R

Python

bash

Pipeline development

HPC environments

Linux

Communication

Education

Masters degree or equivalent in a domain science; Ph.D. preferred

Tools

R

Python

bash

Job description

The Mount Sinai Health System is seeking an Associate Computational Scientist to advance sequencing and imaging data workflows within the MSSM Scientific Computing Group. The role collaborates with researchers to deploy codes on HPC clusters and optimize laboratory data processing pipelines.

Ideal candidates hold a Masters (Ph.D. preferred) with experience in RNA sequencing analysis, bioinformatics, and Linux-based scientific workflows, and can contribute to data curation, analysis, and