Bioinformation B

University of Pennsylvania; Philadelphia (Philadelphia County); On-site; USD 67,000 - 102,000; Full time

Benefits offered by this job

Health benefits

Tuition benefits

Professional development

Job summary

University of Pennsylvania in Philadelphia is seeking a Bioinformatician B to join the Nathanson laboratory. The role focuses on single cell data analysis, highly multiplex immunohistochemistry, RNA and DNA sequencing data, and multi-omics analyses, with opportunities to work on genome-wide genotyping and NGS data from large datasets.

You will work semi-independently, provide bioinformatics support to investigators, manage collaborative groups, and contribute to reporting and publication of

Qualifications

• Master of Science and 3 to 5 years of data analysis experience or equivalent combination of education and in the areas of Bioinformatics, Biostatistics, Epidemiology, Genetic Epidemiology, Computer Science, Data Science, Informatics or similar fields experience or equivalent combination of education and experience is required.
• Experience working in a Linux environment.
• Competence in R/Python programming languages and bash scripting; and
• The ability to work with a multi-disciplinary team and communicate effectively with team members.
• Additional requirements include ability to work independently and apply critical thinking and sound judgment and excellent organizational and time management skills.
• Additional experience in other languages like Perl, C/C++, and SQL, statistical analysis software like SAS and Stata, and various development environments is highly desired.
• Prior experience with single cell sequencing and NGS data a plus.

Responsibilities

• Analyze single cell data, highly multiplex immunohistochemistry data, RNA and DNA sequencing datasets, and multi-omics analyses.
• Construct data analysis pipelines and develop bioinformatics applications.
• Report and publish analytic findings from studies in collaboration with Penn groups and international colleagues.
• Collaborate with investigators to identify genomic risk factors for cancer and related phenotypes in large cohorts.

Skills

Bioinformatics

R/Python

Linux

Team collaboration

Independent work

Scripting

Single cell sequencing

Education

Master of Science

Tools

Perl

C/C++

SQL

SAS

Stata

Job description

Bioinformation B

University Overview

The University of Pennsylvania, the largest private employer in Philadelphia, is a world-renowned leader in education, research, and innovation. This historic, Ivy League school consistently ranks among the top 10 universities in the annual U.S. News & World Report survey. Penn has 12 highly-regarded schools that provide opportunities for undergraduate, graduate and continuing education, all influenced by Penn's distinctive interdisciplinary approach to scholarship and learning. As an employer Penn has been ranked nationally on many occasions with the most recent award from Forbes who named Penn one of America's Best Large Employers in 2023.

Penn offers a unique working environment within the city of Philadelphia. The University is situated on a beautiful urban campus, with easy access to a range of educational, cultural, and recreational activities. With its historical significance and landmarks, lively cultural offerings, and wide variety of atmospheres, Philadelphia is the perfect place to call home for work and play.

The University offers a competitive benefits package that includes excellent healthcare and tuition benefits for employees and their families, generous retirement benefits, a wide variety of professional development opportunities, supportive work and family benefits, a wealth of health and wellness programs and resources, and much more.

Posted Job Title

Bioinformation B

Job Profile Title

Bioinformatician B

Job Description Summary

The Nathanson laboratory is hiring a bioinformatician/programmer with expertise in statistical analysis to participate in on-going research in large-scale genomics and transcriptomics projects in the inherited and somatic genetics of cancer. This position seeks individuals to work semi-independently, providing bioinformatics support to investigators; managing and working in collaborative groups, locally, nationally and internationally.

Job Description

The Bioinformation B focuses on the analysis of single cell data analysis, highly multiplex immunohistochemistry data, RNA and DNA sequencing data sets, and multi 'omics analyses, along with large clinical datasets. If interested, the individual also will have the opportunity to work on analyzing genome-wide genotyping and next-generation sequencing data from large data sets (e.g. UK Biobank); constructing data analysis pipelines; developing bioinformatics applications; and working with investigators to report and publish analytic findings from studies. We collaborate with multiple Penn groups and colleagues in major national and international research institutions to identify genomic risk factors for cancer and related phenotypes in large cohorts, case-control studies, family studies, and biobanks. Furthermore, the lab benefits from close collaborations with other analysts across Penn Medicine.

This position offers opportunities for career development, including the development of independent projects, participation in and presentation at national and international meetings, and manuscript preparation and publication.

Qualifications

• Master of Science and 3 to 5 years of data analysis experience or equivalent combination of education and in the areas of Bioinformatics, Biostatistics, Epidemiology, Genetic Epidemiology, Computer Science, Data Science, Informatics or similar fields experience or equivalent combination of education and experience is required.
• Experience working in a Linux environment.
• Competence in R/Python programming languages and bash scripting; and
• The ability to work with a multi-disciplinary team and communicate effectively with team members.
• Additional requirements include ability to work independently and apply critical thinking and sound judgment and excellent organizational and time management skills.
• Additional experience in other languages like Perl, C/C++, and SQL, statistical analysis software like SAS and Stata, and various development environments is highly desired.
• Prior experience with single cell sequencing and NGS data a plus.

This position is contingent upon grant funding.

Job Location - City, State

Philadelphia, Pennsylvania

Department / School

Perelman School of Medicine

Pay Range

$67,155.00 - $101,500.00 Annual Rate
Salary offers are made based on the candidate's qualifications, experience, skills, and education as they directly relate to the requirements of the position, and in alignment with salary ranges based on external market data for the job's level. Internal organization and peer data at Penn are also considered.

Equal Opportunity Statement

The University of Pennsylvania is an equal opportunity employer. Candidates are considered for employment without regard to race, color, sex, sexual orientation, religion, creed, national origin (including shared ancestry or ethnic characteristics), citizenship status, age, disability, veteran status or any class protected under applicable federal, state or local law.

Equal Employment Opportunity Statement

The University of Pennsylvania is an equal opportunity employer. Candidates are considered for employment without regard to race, color, sex, sexual orientation, religion, creed, national origin (including shared ancestry or ethnic characteristics), citizenship status, age, disability, veteran status or any class protected under applicable federal, state, or local law.

Special Requirements

Background checks may be required after a conditional job offer is made. Consideration of the background check will be tailored to the requirements of the job.

University Benefits

• Health, Life, and Flexible Spending Accounts: Penn offers comprehensive medical, prescription, behavioral health, dental, vision, and life insurance benefits to protect you and your family's health and welfare. You can also use flexible spending accounts to pay for eligible health care and dependent care expenses with pre-tax dollars.
• Tuition: Take advantage of Penn's exceptional tuition benefits. You, your spouse, and your dependent children can get tuition assistance here at Penn. Your dependent children are also eligible for tuition assistance at other institutions.
• Retirement: Penn offers generous retirement plans to help you save for your future. Penn's Basic, Matching, and Supplemental retirement plans allow you to save for retirement on a pre-tax or Roth basis. Choose from a wide variety of investment options through TIAA and Vanguard.
• Time Away from Work: Penn provides you with a substantial amount of time away from work during the course of the year. This allows you to relax, take vacations, attend to personal affairs, recover from illness or injury, spend time with family-whatever your personal needs may be.
• Long-Term Care Insurance: In partnership with Genworth Financial, Penn offers faculty and staff (and your eligible family members) long-term care insurance to help you cover some of the costs of long-term care services received at home, in the community or in a nursing facility. If you apply when you're newly hired, you won't have to provide proof of good health or be subject to underwriting requirements. Eligible family members must always provide proof of good health and are subject to underwriting.
• Wellness and Work-life Resources: Penn is committed to supporting our faculty and staff as they balance the competing demands of work and personal life. That's why we offer a wide variety of programs and resources to help you care for your health, your family, and your work-life balance.
• Professional and Personal Development: Penn provides an array of resources to help you advance yourself personally and professionally.
• University Resources: As a member of the Penn community, you have access to a wide range of University resources as well as cultural and recreational activities. Take advantage of the University's libraries and athletic facilities, or visit our arboretum and art galleries. There's always something going on at Penn, whether it's a new exhibit at the Penn Museum, the latest music or theater presentation at the Annenberg Center, or the Penn Relays at Franklin Field to name just a few examples. As a member of the Penn community, you're right in the middle of the excitement-and you and your family can enjoy many of these activities for free.
• Discounts and Special Services: From arts and entertainment to transportation and mortgages, you'll find great deals for University faculty and staff. Not only do Penn arts and cultural centers and museums offer free and discounted admission and memberships to faculty and staff. You can also enjoy substantial savings on other goods and services such as new cars from Ford and General Motors, cellular phone service plans, movie tickets, and admission to theme parks.
• Flexible Work Hours: Flexible work options offer creative approaches for completing work while promoting balance between work and personal commitments. These approaches involve use of non-traditional work hours, locations, and/or job structures.
• Penn Home Ownership Services: Penn offers a forgivable loan for eligible employees interested in buying a home or currently residing in West Philadelphia, which can be used for closing costs or home improvements.
• Adoption Assistance: Penn will reimburse eligible employees on qualified expenses in connection with the legal adoption of an eligible child, such as travel or court fees, for up to two adoptions in your household.