Bioinformatics Engineer II

Tempus; California, Northern (MO, KY); On-site; USD 90,000 - 140,000; Full time

Job summary

Tempus seeks a Bioinformatics Engineer II to drive end-to-end software development, from ideation to release, focusing on Python-based solutions in a remote US setting. You will design, implement, and optimize pipelines while mentoring teammates and maintaining robust code quality.

The role requires strong collaboration with product owners and clients, with emphasis on SQL databases, Git workflows, and CI/CD practices within a fast-paced, research-driven environment.

Qualifications

• Bachelor's degree or higher in Bioinformatics, CS or related field with relevant work experience.
• Proficient in Python coding and Linux environments.
• Experience with relational databases (MySQL, PostgreSQL, MSSQL).
• Familiarity with git, unit testing, and proper documentation.

Responsibilities

• Design and develop custom software per ticket specs.
• Mentor junior engineers and set coding standards.
• Review code and provide constructive feedback.
• Interact with stakeholders to clarify workflows and requirements.
• Monitor runs, troubleshoot issues, and resolve blockers.

Skills

Python

Linux

Databases

Git

Unit testing

Documentation

Communication

Education

Bachelor's degree + 5 years

Master’s degree + 2 years

PhD in related field

Tools

Docker

APIs

CI/CD

Job description

## Bioinformatics Engineer IIApplylocations: Remote - Californiatime type: Full timeposted on: Posted Yesterdayjob requisition id: JR202600797**Compensation:**Pay Range: $90,000 - $140,000 USD**Essential Functions:*** Drive technical solutions to problems, including end-to-end process flow from ideation to release, and estimating time and complexity* Design and develop custom software according to ticket specifications* Act as a role model for the team, settings standards for excellence and mentoring junior engineers* Provide clear and consistent feedback on code reviews* Meet with clients, partners, product owners, or other stakeholders to understand and clarify workflows and requirements* Highlight blockers or issues arising during development to resolve in a timely manner* Monitor process and log information, troubleshooting issues as needed* Other duties as assigned.**Qualifications:*** Bachelor's degree (+ at least 5 years work experience), Master’s degree (+ at least 2 years work experience), or PhD degree in Bioinformatics, Computer Science, or a related field* Proficient in Python coding* Intermediate-to-advanced experience working in Linux environments (e.g. compiling programs from source, performing text manipulations with pipes)* Intermediate-to-advanced experience in relational databases (e.g., MySQL, PostgreSQL, Microsoft SQL Server)* Proficiency with software engineering best practices, including git version control, unit testing, and documentation* Knowledge of next-generation sequencing technologies and standard bioinformatics data formats (e.g., FASTQ, BAM, VCF, GTF)* Excellent communication and interpersonal skills.**Preferred:*** Experience with cloud computing environment (AWS, Azure, Google Cloud)* Familiarity with Atlassian suite applications (Jira, Confluence, BitBucket)* Knowledge of clinical genetics databases (e.g., Clinvar, HGMD) and HGVS sequence variant nomenclatures* Prior experience in biology and/or an understanding of mutation analysis* Creating and developing Docker containers* Experience developing APIs* Experience with CI/CD (e.g. Bamboo, Jenkins, AWS Code Pipeline)