Bioinformatics Data Engineer

Yahara Software; Madison (WI); Hybrid; USD 120,000 - 150,000; Full time

Benefits offered by this job

Health insurance

Dental & Vision coverage

401(k) with match

Hybrid/remote schedule

On-site gym

Job summary

Yahara Software is seeking a Bioinformatics Data Engineer in Madison, WI to turn raw lab, genomics, and research data into clean, analysis-ready datasets. You’ll design data models and build repeatable pipelines, enabling researchers to query and reuse complex data efficiently.

You will apply statistics and exploratory analyses, create insightful visualizations, and mentor engineers while owning project delivery.

Qualifications

• 6+ years in data science, data engineering, or software engineering.
• Hands-on wrangling of large, messy datasets into usable form.
• Knowledge of statistics and exploratory data analysis.
• Experience leading technical work for a team.

Responsibilities

• Turn raw lab, research, and genomics data into clean, analysis-ready datasets.
• Design data models that make scientific data easy to query and reuse.
• Build repeatable data pipelines so analyses don’t start from scratch.
• Apply statistical methods and exploratory analyses to reveal what data says.
• Create visualizations to help researchers interpret results at a glance.
• Build data quality checks to catch issues before results are produced.
• Partner with scientists to understand the biology behind the data.
• Own technical delivery for your project team and mentor engineers.
• Present results, tradeoffs, and risks to clients in plain language.
• Join pre-sales conversations with outlines and rough estimates.

Skills

Python

R

SQL

Data modeling

Nextflow

Tools

Postgres

SQL Server

Databricks

Jupyter

Job description

Bioinformatics Data Engineer

Love taking raw scientific data and turning it into something researchers can trust and use? Come work with a team shaping lab, research, and genomics data for life sciences startups, CROs, and instrument developers doing work that matters.

About Yahara:

We help scientific organizations solve hard problems and move their industries forward, from life sciences startups and CROs to the teams building lab software and scientific instruments. It's work we're proud of, and we're excited about the successes still ahead.

Join a team recognized as one of Madison Magazine's Best Places to Work, where innovation thrives and collaboration drives success. We don't just build software. We empower people and transform industries.

Important Notes about this Position:

• This is a hybrid position based out of our office in Madison, WI.
• We are unable to provide sponsorship.

The Opportunity:

You’ll work on client projects where the data is the hard part: messy, high-volume, and scientifically complex. You’ll clean it, structure it, and analyze it so scientists get answers faster. You’ll set technical direction, grow the engineers around you, and be the person clients call when their data isn’t telling them anything yet.

Our Approach:

We build on strong engineering fundamentals: solid methodology, rigorous testing, and sound architecture. We use AI tools like Claude and Codex where they speed up delivery, while keeping critical thinking and engineering discipline at the center. We own the quality, accuracy, and understanding of the code we ship.

What You’ll Do:

• Turn raw lab, research, and genomics data into clean, analysis-ready datasets.
• Design data models that make scientific data easy to query and reuse.
• Build repeatable pipelines so analysis doesn’t start from scratch every time.
• Apply statistical methods and exploratory analysis to find what the data is saying.
• Create visualizations that help researchers see results at a glance.
• Build data quality checks that catch problems before they reach a result.
• Partner with scientists to understand the biology behind the data.
• Own technical delivery for your project team: quality, pace, and direction.
• Mentor the engineers on your team through code reviews and one-on-one problem solving.
• Help engineers work through hard problems instead of solving them for them.
• Present results, tradeoffs, and risks to clients in plain language.
• Join pre-sales conversations with solution outlines and rough estimates.
• Document key decisions in ADRs so the next team knows why, not just what.

What You’ll Bring:

Experience:

• 6+ years in data science, data engineering, or software engineering.
• Hands-on experience wrangling large, messy datasets into usable form.
• A working knowledge of statistics and exploratory data analysis.
• Time leading technical work for a team, formally or informally.

Mindset:

• Real curiosity about the science behind the data.
• Rigor about data quality, reproducibility, and traceability.
• Genuine interest in helping other engineers grow.
• Ability to explain findings to scientists and non-technical stakeholders alike.

Nice to Have:

• Experience with lab, research, genomics, or bioinformatics data.
• Familiarity with LIMS, ELNs, or instrument data.
• Work in regulated environments (HIPAA, FDA, GxP, 21 CFR Part 11).
• Machine learning applied to scientific data.
• Consulting or client-facing project experience.

Tech Like What You’ll Use (examples, not requirements; we’re stack agnostic):

• Python (pandas, NumPy, SciPy) and/or R
• Notebooks like Jupyter
• Workflow tools like Nextflow, Snakemake, and Airflow
• Relational and analytical databases (Postgres, SQL Server, Databricks, or similar)
• Visualization tools like Plotly, ggplot2, or Power BI
• Cloud platforms: Microsoft Azure and Amazon Web Services

Company Benefits & Perks

• 20+ days of PTO accruable in the first year!
• Comprehensive health insurance (Medical, Dental, Vision) with HMO and PPO options
• Health Savings Account (HSA) with annual employer contributions
• 401(k) with guaranteed company match (Traditional and Roth options)
• 100% company-paid short-term and long-term disability
• 100% company-paid life insurance with option to increase coverage
• 100% company-paid identity theft protection
• On-site gym with basketball court
• Hybrid/remote schedule with home office stipend
• Fresh fruit, healthy snacks, and beverages provided daily
• Bonus certification program (Microsoft, AWS, PMP, IIBA, etc.)
• Employee Assistance Program (counseling, legal, financial services)
• Monthly and Quarterly Recognition Awards with spot bonuses
• Company-supported community outreach and volunteer opportunities
• Employee-run committee involvement opportunities
• Collaborative culture founded on realized values and incredible people

If you need an accommodation as part of the employment process, please contact Human Resources via email at [e-mail]

Yahara Software LLC is an Equal Employment Opportunity/Affirmative Action Employer.

This is a full-time, salaried position with competitive salary and benefits. Candidates must be eligible to work in the U.S. on a permanent basis and can work on-site in our office located in Madison, Wisconsin.