Bioinformatician: Genomics Data Analyst & Pipelines

Stanford University School of Medicine; Palo Alto (CA); On-site; USD 108,000 - 128,000; Full time

Job summary

Stanford University School of Medicine in Palo Alto seeks a Bioinformatician to join the Julia Salzman lab. You will run new algorithms, develop reproducible pipelines for high-throughput genomic data, and collaborate with research teams to address biological questions.

Responsibilities include data extraction and integration, designing reports, and contributing to publications. Proficiency in shell, R, Python, and MATLAB; familiarity with Docker and SLURM; and ability to work independently are

Qualifications

• Shell, command line and analytical skills required.
• Experience with high-throughput genomic data analysis.
• Programming in R, MATLAB, Python or Perl for data analysis.
• Ability to develop novel data analysis pipelines.
• Familiarity with reproducible computing and Docker.

Responsibilities

• Prioritize and extract data from various sources and maintain accuracy.
• Design and customize reports based on database data.
• Oversee regulatory compliance for data usage.
• Create charts, graphs, and tables for publication.
• Test prototype software and assist in release processes.
• Collaborate with research teams and work independently when needed.

Skills

Shell scripting

Analytical skills

Writing skills

Prioritization

Programming languages

Pipelines development

Education

Bachelor's + 3 years experience

PhD in related field

Quantitative discipline experience

Tools

Bowtie

Docker

SLURM

Unix

Job description

Stanford University School of Medicine in Palo Alto seeks a Bioinformatician to join the Julia Salzman lab. You will run new algorithms, develop reproducible pipelines for high-throughput genomic data, and collaborate with research teams to address biological questions.

Responsibilities include data extraction and integration, designing reports, and contributing to publications. Proficiency in shell, R, Python, and MATLAB; familiarity with Docker and SLURM; and ability to work independently are