Associate Director, Automation Engineering

MFS Investments; Boston (MA); Hybrid; USD 166,000 - 249,000; Full time

Job summary

Vertex Pharmaceuticals in Boston, MA is seeking an Associate Director of Automation Engineering to lead the AMP team in developing automated manufacturing solutions for Cell & Genetic Therapies. You will guide a talented group of engineers and scientists to design, qualify, and deploy custom automation equipment and OT systems for development and manufacture.

This role requires strong leadership, hands-on problem solving, and a track record of delivering robust, compliant systems.

Qualifications

• PhD or equivalent in relevant field with 5+ years life sciences/engineering experience.
• Strong experience designing and deploying automated manufacturing equipment.
• Experience with validation and regulatory compliance (GMP, ISO 13485, 21 CFR).

Responsibilities

• Lead an interdisciplinary automation team from concept to deployment.
• Define automation strategy and oversee equipment qualification.
• Manage vendor selection and part prototyping.
• Support validation, deviations, CAPA, and change control.
• Coordinate technology transfer to manufacturing.
• Ensure integration with enterprise systems and troubleshooting.

Skills

Electromechanical aptitude

Team leadership

Project management

Technical writing

Communication skills

Problem solving

Presentation skills

Strategic thinking

Education

PhD in chemical engineering, computer science, automation engineering or related field

Master's Degree in chemical engineering, computer science, automation engineering or related field

Bachelor's Degree in chemical engineering, computer science, automation engineering or related field

Tools

PLC (DeltaV)

Vision systems

Robotics

AMR/AGV

Automation software

Control systems

Job description

# Associate Director, Automation EngineeringVertex PharmaceuticalsBoston, MAFull-TimeOct 08, 2026Engineering## Job Description**Job Description****General Summary:** Vertex’s Automation of Machinery and Processes (AMP) Team is seeking a high-impact leader to develop cutting-edge manufacturing solutions for its Cell & Genetic Therapies programs. This pivotal role is at the forefront of automating complex processes in one of the most dynamic and rapidly evolving fields in biotechnology. You will work with a passionate team of engineers, scientists, and innovators united by a shared mission: to push the boundaries of what’s possible in Cell & Genetic Therapy. This critical position will lead an interdisciplinary engineering team in novel equipment & systems development, vendor selection, equipment qualification, technology transfer, and continuous improvement to deliver robust and reliable manufacturing systems. **Key Duties and Responsibilities:** * Lead a team of equipment and automation engineers involved in the design, development, deployment, and qualification of custom automation equipment and operation technology systems used for the development and manufacture of cell and genetic therapies.* Lead Equipment, System, and Automaton Projects from concept through execution in a dynamic development environment. Ensures user requirements are clearly defined and translated into achievable and testable engineering requirements.* Manage and execute the development of mechanical, electrical, and controls systems for capital equipment. Define automation execution strategy from concept feasibility through commercial deployment. Present to senior leadership as required.* Responsible for active oversight of the equipment / system design and commissioning process. Collaborate with vendors to produce prototype and production parts. Perform engineering analyses and relevant physical testing on designs.* Utilize operations simulation tools to identify and quantify automation opportunities.* Ensures seamless integration of automation control systems into existing enterprise systems.* Provide hands-on troubleshooting assistance to manufacturing in support of a rapid development cycle and manufacturing sustainability.* Collaborates with manufacturing engineering to define, manage, and continuously improve equipment performance, preventative maintenance plans, and spare parts lists/inventory.* Evaluate and recommend automation upgrades to existing equipment or systems. Prioritize projects and assign resources to complete projects on-time and within budget.* Review and/or draft Equipment Drawings, Electrical Diagrams, System Manuals, Engineering Protocols and Reports, Validation Documentation, and other Quality System Documentation.* Develop departmental procedures for development and documentation of automated systems, from specifications through operational procedures.* Support Deviation Management, CAPA, and Change Control activities, as required. Serve as Automation SME to Quality, Manufacturing, and other Functions. Support manufacturing investigations, including OOSs, OOTs, RCAs, etc.* Execute assigned duties on time and within budget; proactively telegraph delays and other issues to relevant stakeholders.* Comply with all regulatory, corporate, and Quality System policies and complete other projects and/or assignments as required.**Knowledge and Skills:** * High degree of electromechanical aptitude with prior experience in designing and implementing automated precision manufacturing equipment, including integration of vision systems and robotics, in bioprocessing, medical device, pharmaceutical, automotive, semiconductor, or diagnostic systems.* Ability to organize and grow a team through organizational change and personnel development.* Experience with automation and equipment business case definition, vendor selection and management, automation and equipment design, development, commissioning, and validation. Experience developing and executing equipment strategy from concept to deployment.* Experience working with a variety of automation hardware, software and applications including, but not limited to, custom-fabricated mechanical components and mechanisms, single-use bioreactors and bioprocessing instruments, vision systems, robotics, AMR and AGV, control systems (PLC, DeltaV, PC), AI-enabled systems, and related control system components, pneumatics, automated process instrumentation.* Proficiency in AI tools and applications with experience developing for lab and manufacturing applications.* Experience qualifying/validating/deploying manufacturing equipment and processes is required. Knowledge and experience in utilizing risk-based approaches to validation process development and validation are highly advantageous.* Familiarity with ISO 13485, ISO 14971, 21 CFR 820, 21 CFR 211, and ICH Q7/8/9. Knowledge of global GMP requirements governing device or combination products.* Familiarity with equipment safety standards and regulations including OSHA 19 CFR 1910, NFPA 70, NFPA 79, ISO 18849-1.* Strong interpersonal, project management, technical writing and presentation skills required.* Sense of urgency, ability to act/escalate promptly, and transparently communicate issues to involved stakeholders and management.* Must be able to work independently with minimal supervision, multi-task, and support several projects simultaneously.* Knowledge of business applications such as MS Office, Veeva, Coupa.* Must demonstrate strong interpersonal, presentation, and teamwork skills.**Education and Experience:*** PhD in chemical engineering, computer science, automation engineering or related field and 5 years experience in life sciences, manufacturing, or engineering, or* Master's Degree in chemical engineering, computer science, automation engineering or related field and 6 years experience in life sciences, manufacturing, or engineering, or* Bachelor's Degree in chemical engineering, computer science, automation engineering or related field and 8 years experience in life sciences, manufacturing, engineering 10-15% domestic & international travel is expected. At Vertex, we embrace continuous learning and encourage employees to stay informed on advances in AI, technology, automation, and industry trends. We seek talent who bring an external perspective, demonstrate curiosity and sound judgment, and thoughtfully adopt new capabilities that improve decision-making, drive innovation, increase efficiency, and help deliver better outcomes for patients.**Pay Range:**$166,000 - $249,000On-Site Designated