R&D Systems Engineer - Pathogen

Ellison Institute of Technology Oxford; Oxford; On-site; GBP 50,000 - 70,000; Full time

Benefits offered by this job

Travel allowance

Bonus

Private medical insurance

Enhanced holiday pay

Pension

Life assurance

Income protection

Therapy services

Electric car scheme

Job summary

A leading research institute in Oxford is seeking an experienced R&D Systems Engineer to develop next-generation diagnostic technology. This role involves designing experiments and analyzing performance data of prototype instrumentation for metagenomic sequencing. Candidates should have experience in instrumentation development, data analysis scripting, and strong collaboration skills. The position offers a competitive salary, travel allowance, and perks including private medical insurance and enhanced holiday pay.

Qualifications

• Experience in instrumentation development or similar R&D environments.
• Demonstrated experience in structured experimental investigations.
• Proficiency in data analysis and scripting (Python, MATLAB).
• Experience with physical systems data acquisition.

Responsibilities

• Design and execute experiments for prototype instrumentation.
• Collect and analyze performance data to identify trends.
• Develop analysis scripts to visualize and report results.
• Collaborate with engineers to support system improvements.

Skills

Instrumentation development

Experimental engineering

Data analysis scripting

Collaborative skills

Tools

Python

MATLAB

Job description

Overview

At the Ellison Institute of Technology (EIT), we're on a mission to translate scientific discovery into real world impact. We bring together visionary scientists, technologists, engineers, researchers, educators and innovators to tackle humanity's greatest challenges in four transformative areas:

• Health, Medical Science & Generative Biology
• Food Security & Sustainable Agriculture
• Climate Change & Managing CO₂
• Artificial Intelligence & Robotics

Within this ecosystem, the Pathogen Mission exemplifies EIT's commitment to transformative science. It aims to revolutionise the diagnosis and treatment of infectious diseases by leveraging whole genome sequencing (WGS)-based metagenomic and pathogen-specific analytical tools. This remit includes the development of a decentralised, sample‑to‑answer sequencing diagnostic platform for infectious diseases, enabling rapid and accurate analysis of patient samples without prior assumptions. Supported by Oracle Inc.'s cloud‑computing scale and security infrastructure, the Pathogen Mission is progressing towards certified diagnostic products for deployment in laboratories, hospitals, and public health organisations worldwide.

Your Role

We are seeking an experienced and detail‑oriented R&D Systems Engineer – Instrumentation & Data to help develop next‑generation diagnostic technology. In this role you will work alongside experts in microfluidics, microbiology, electronics and firmware to design, build and iterate prototype instrumentation for a point‑of‑care device capable of metagenomic sequencing through a microfluidic cartridge interface.

You will take a hands‑on role in designing experiments, collecting and analysing performance data from prototype systems, and supporting data‑driven engineering improvements within a collaborative R&D environment with evolving challenges. This position sits at the intersection of hardware, embedded control and data analysis, and you will contribute directly to the development of decentralised diagnostic systems aimed at improving infectious disease detection in hospitals and public health settings worldwide.

Key Responsibilities

• Design and execute structured experiments to evaluate performance of cartridge‑based modules and prototype instrumentation
• Collect, analyse and interpret experimental data to identify performance trends, variability sources and failure modes
• Develop analysis scripts and tools (e.g. Python‑based) to process, visualise and report experimental results
• Work closely with microfluidics, electronics and firmware engineers to interpret experimental findings and support system improvements
• Support the implementation of reliable data acquisition from sensors and embedded control systems
• Collaborate closely with microbiologists, microfluidics engineers and data scientists to translate experimental findings into system improvements by correlating mechanical, electrical and software behaviour with performance data
• Contribute to defining test protocols and evaluating module performance against agreed targets
• Support efforts to improve repeatability and robustness through structured data analysisMaintain clear and structured documentation of experimental setups, configurations and analysis outputs

Requirements

Knowledge, Skills and Experience:

• Experience in instrumentation development, experimental engineering, applied systems engineering or similar R&D environments (industry or advanced academic research experience considered)
• Demonstrated experience designing and executing structured experimental investigations
• Proficiency in data analysis and scripting (e.g. Python, MATLAB or similar)
• Experience acquiring and interpreting data from physical systems (e.g. pressure, temperature, flow, force, motion or optical sensors)
• Ability to identify patterns and potential root causes from experimental data
• Familiarity with retrieving and interpreting logged data from embedded or Linux‑based control systems
• Comfortable working hands‑on in a laboratory environment to support test setup and troubleshooting
• Strong analytical and problem‑solving skills
• Ability to work collaboratively within multidisciplinary engineering teams
• Clear technical documentation and reporting skills

We recognise that candidates may not meet every listed criterion. If your experience aligns with most of the requirements and you are motivated by the mission, we encourage you to apply.

Desirable Knowledge, Skills and Experience

• Experience working with laboratory instrumentation, medical devices or scientific equipment
• Familiarity with signal processing or sensor calibration techniques
• Exposure to actuator‑based instrumentation (e.g., pumps, valves, motors)
• Basic understanding of contamination control considerations in laboratory equipment
• Experience contributing to early‑stage product development (concept → prototype → refinement)

Key Attributes

• Curious and analytical, committed to rigorous, evidence‑based decision‑making
• Comfortable working in fast‑moving, experimental environments with evolving requirements
• Detail‑oriented and methodical in experimental planning and documentation
• Comfortable translating experimental insight into practical implementation, able to bridge the gap between lab experimentation and engineering implementation
• Clear communicator, able to explain technical findings to multidisciplinary teams
• Takes initiative and works effectively both independently and as part of a team to highlight performance improvement opportunities

Benefits

• Salary: Competitive + travel allowance + bonus
• Enhanced holiday pay
• Pension
• Life Assurance
• Income Protection
• Private Medical Insurance
• Hospital Cash Plan
• Therapy Services
• Perk Box
• Electric Car Scheme

Working Together – What It Involves

• You must have the right to work permanently in the UK with a willingness to travel as necessary. In certain cases, we can consider sponsorship, and this will be assessed on a case‑by‑case basis
• You will live in, or within easy commuting distance of, Oxford (or be willing to relocate)