AI/ML Postdoctoral Fellow – F Rouhani lab

Crick; Greater London; Hybrid; GBP 43,000 - 52,000; Full time

Benefits offered by this job

Visas: Sponsorship for UK work visa

Pension Scheme

Job summary

The Francis Crick Institute in London invites applications for an AI/ML Postdoctoral Fellow in the F Rouhani Lab to lead a cutting-edge computational project across spatial genomics and cancer biology.

The role combines advanced machine learning, graph neural networks and transformer models to study driver mutation clones and their microenvironment, in a highly collaborative setting spanning Crick and Wellcome Sanger Institute.

Qualifications

• PhD (or near submission) in computational biology, machine learning, CS, statistics or related field.
• Experience applying deep learning/AI to complex scientific datasets.
• Strong programming and scientific computing skills in Python (numpy, pandas, PyTorch and/or JAX).

Responsibilities

• Develop advanced AI/ML methods for spatial genomics and histology data.
• Apply GNNs, transformers and generative AI to clone-microenvironment interactions.
• Integrate spatial transcriptomics, single-cell sequencing and imaging data.
• Design benchmarking strategies and reproducible computational workflows.
• Lead publications and present at conferences.

Skills

Python

PyTorch

JAX

AI/ML methods

Graph neural networks

Education

PhD or near submission

Tools

Cloud

HPC

Workflow orchestration

Job description

AI/ML Postdoctoral Fellow – F Rouhani Lab

Contract term: This is a full-time, fixed term (4 years) position on Crick terms and conditions of employment.

Reports to: Foad Rouhani, Group Leader

Salary for this Role: From £47,500 with benefits, subject to skills and experience

About us

The Francis Crick Institute is Europe’s largest biomedical research institute under one roof. Our world-class scientists and staff collaborate on vital research to help prevent, diagnose and treat illnesses such as cancer, heart disease, infectious diseases and neurodegenerative conditions.

The Crick is a place for collaboration, innovation and exploration across many disciplines. A space where the brightest minds can pursue big and bold ideas and discover answers to crucial scientific questions. We support them in a dynamic environment which fosters excellence with state-of-the-art infrastructure, cutting-edge facilities, and a creative and curious culture. We’ve removed traditional boundaries of departments, divisions and disciplines and instead have an open approach that supports every researcher. This gives us the freedom to take risks and carry out high-quality, pioneering research. Creating a space for discovery without boundaries helps us to turn our science into benefits for human health and the economy.

About the TRCE Lab

The Tissue Regeneration and Clonal Evolution (TRCE) laboratory is a multidisciplinary research group focused on understanding how organs regenerate and how this knowledge can be harnessed to develop future therapies.

Using the liver as a model system, the lab combines stem cell biology, spatial genomics, AI/ML, single-cell technologies and computational biology to study how mutant cell populations interact with their surrounding tissue environment during regeneration, ageing and cancer development.

About the role

We are seeking an ambitious Postdoctoral Fellow to lead a cutting-edge computational project investigating how driver mutation clones interact with their microenvironment in chronic liver disease and liver cancer.

This is a highly collaborative and cross-institutional role between the Francis Crick Institute and the Wellcome Sanger Institute. Working closely with the Lotfollahi Lab – leaders in generative AI and foundation models for spatial and single-cell genomics – you will develop and apply state-of-the-art machine learning approaches to large-scale spatial genomics and multi-modal biological datasets.

The successful candidate will be embedded across both institutes, benefiting from joint supervision, collaborative meetings and access to world-leading expertise, datasets, computational infrastructure and scientific networks.

Applicants from machine learning, computer science, statistics, mathematics or related quantitative disciplines are encouraged to apply – prior genomics experience is not essential, and structured training and support will be provided.

What you’ll be doing

• Developing advanced AI/ML methods for analysing spatial genomics and histology datasets.
• Applying graph neural networks, transformer models and generative AI approaches to study clone-microenvironment interactions.
• Integrating spatial transcriptomics, single-cell sequencing and imaging datasets.
• Designing benchmarking strategies and reproducible computational workflows.
• Performing clonal reconstruction and spatial mapping analyses from genomic datasets.
• Collaborating closely with computational scientists, clinicians and experimental researchers across the Crick and Sanger Institute.
• Leading publications, conference presentations and dissemination of research findings.
• PhD (or near submission) in computational biology, machine learning, computer science, statistics or a related quantitative discipline.
• Experience developing and applying deep learning or AI/ML methods to complex scientific datasets.
• Strong programming and scientific computing skills in Python (e.g. numpy, pandas, PyTorch and/or JAX).
• Experience analysing complex biological, imaging or spatial datasets, or strong evidence of rapidly adapting to new data domains.
• Excellent communication, organisational and collaborative working skills.
• Ability to work effectively within interdisciplinary and cross-institutional research teams.
• Experience with spatial transcriptomics or single-cell genomics analysis.
• Familiarity with graph neural networks, transformers, generative AI or foundation models.
• Experience working with cloud/HPC environments, workflow orchestration or reproducible computational pipelines
• Publications or presentations at leading computational biology or machine learning conferences.
• Interest in cancer biology, tissue regeneration or translational genomics.

About Working at the Crick

Our values

Everyone who works at the Crick has a valuable role to play in advancing the Crick’s mission and shaping our culture!

• We arebold. We make space for creative, dynamic and imaginative ideas and approaches. We’re not afraid to do things differently.
• We areopen. We’re highly collaborative and interactive, and make sure our activities are visible to the outside world.
• We arecollegial. We show respect for one another, work cooperatively and support the wider community.

At the Francis Crick Institute, we believe that diversity and inclusion are essential to driving innovation and scientific discovery. We are committed to creating a workplace where everyone feels valued, respected, and empowered to succeed, regardless of their background, identity, or personal circumstances. We actively encourage applications from individuals of all genders, ethnicities, abilities, and experiences. Weare aDisability Confident: Committedemployer andwant to ensure that everyone can apply and be part of our recruitment processes and sowe'llmake reasonable adjustments if you need them - just let us know when you apply. If you needassistancewith applying (i.e., would like to apply by phone or post)please email: [e-mail].

At the Francis Crick Institute, we value our team members and are proud to offer an extensive range of benefits to support their well-being and development:

• Visas: Applicants for this role will be eligible for sponsorship to work in the UK
• Generous Leave: 28 days of annual leave, plus three additional days over Christmas and bank holidays.
• Pension Scheme: Defined contribution pension with employer contributions of up to 16%.
• 24/7 GP consultation services.
• Occupational health services and mental health support programs.
• Eye care vouchers and discounted healthcare plans.
• Work-Life Balance:
• Childcare support allowance.
• Annual leave purchase options.
• Crick Networks offering diverse groups’ support, community and inclusive social events.
• Discounted gym memberships, bike-to-work scheme, and shopping discounts.
• Subsidised on-site restaurant and social spaces for team interaction.
• Career support: A Post-doc to PI programme and other career development activities

We reserve the right to withdraw this advert at any given time due to the number of applications received.