Post-doctoral (M/F) : Combining Fluorescence Microscopy and Solid State NMR to study the effect of antimicrobial peptides on living bacteria

France - BioImaging; Orléans; On-site; EUR 30,000 - 36,000; Full time

Job summary

France - BioImaging in Orléans invites applications for a Post-doctoral researcher to join the ANTARBioTic project, combining real-time fluorescence microscopy and solid-state NMR to study antimicrobial peptides on living bacteria. The position is based in Orléans, supporting collaboration with CNRS platforms and Sorbonne University.

The successful candidate will conduct experiments, supervise students, and contribute to dissemination.

Qualifications

• Strong expertise in fluorescence microscopy and NMR spectroscopy on biological samples.
• Experience with cell culture or microbiology is required.
• Doctoral-level research experience and ability to supervise students.

Responsibilities

• Perform real-time fluorescence spectroscopy and solid-state NMR experiments on living bacteria.
• Supervise students and contribute to project dissemination.

Skills

Fluorescence microscopy

NMR spectroscopy

Cell culture

Microbiology

Education

Doctorat (PhD)

Tools

Solid-state NMR

Fluorescence microscopy equipment

Job description

Post-doctoral (M/F) : Combining Fluorescence Microscopy and Solid State NMR to study the effect of antimicrobial peptides on living bacteria

Available from:November 1, 2024

Position Information:

General information

Offer title :Post-doctoral (M/F) : Combining Fluorescence Microscopy and Solid State NMR to study the effect of antimicrobial peptides on living bacteria (H/F)
Reference : UPR4301-LAELEG-035
Number of position : 1
Workplace :ORLEANS
Date of publication :05 August 2024
Type of Contract :FTC Scientist
Contract Period : 24 months
Expected date of employment : 1 November 2024
Proportion of work :Full time
Remuneration :from 2 991 € gross monthly depending on experience
Desired level of education :Niveau 8 – (Doctorat)
Experience required :1 to 4 years
Section(s) CN :Chemistry of and for life: design and properties of molecules of biological interest

Missions

Context: There is an urgent need of new generations of antimicrobial compounds, to counteract microbial resistance. AntiMicrobial Peptides (AMPs), essentials effectors of the immunity of all living organisms, are recognized as a promising alternative against resistance to antibiotics. Understanding, at the molecular level, how AMPs work in nature is the first essential step towards rational engineering of highly effective compounds.
The ANR ANTARBioTic project “Deciphering the mechanisms of action of the salt-insensitive king penguin defensins to fulfill the Global One Health Needs” is focused on the determination of the mechanism of action of a promising disulfide-rich antimicrobial peptide from the penguin. In this project, we are developing two biophysical techniques to work with living bacteria: real-time Fluorescence spectroscopy (1), and solid-state NMR (2). Céline Landon has brought a brand new in vivo real-time Fluorescence spectroscopy experiment to Orléans, while Dror Warschawski has extended the deuterium solid-state NMR approach of Sorbonne University’s NMR platform to the study of living cells.
(1) C. Landon, Y. Zhu, M. Mustafi, J.-B. Madinier, D. Lelièvre, V. Aucagne, A. F. Delmas, J. C. Weisshaar “Real-Time Fluorescence Microscopy on Living E. coli Sheds New Light on the Antibacterial Effects of the King Penguin beta-Defensin AvBD103b”. Int. J. Mol. Sci.,23:2057 (2022)
(2) V. Booth, D. E. Warschawski, N. P. Santisteban, M. Laadhari and I. Marcotte “Recent progress on the application of 2H solid-state NMR to probe the interaction of antimicrobial peptides with intact bacteria”. Biochim. Biophys. Acta 1865:1500-1511 (2017)

Activities

Real- time Fluorescence spectroscopy and solid-state Nuclear Magnetic Resonance, for studying living bacteria
The successful candidate will also be involved in the supervision of students.
Keywords: Antibiotic resistance, alternatives to Antibiotics, Antimicrobial Peptides (AMPs), Mechanism of action, Biophysics, Microbiology, Fluorescence microscopy, solid-state NMR

Skills

We are currently looking for a highly skilled and motivated candidate with demonstrated expertise in Fluorescence microscopy (essential skills) and NMR spectroscopy on biological samples, with a strong desire to expand their competences to in vivo biophysics techniques. Skills in cell culture or microbiology are necessary.

Work Context

The Centre for Molecular Biophysics (CNRS, Orléans, France; http://cbm.cnrs-orleans.fr/en/le-laboratoire-accueil/ develops research at the interface of chemistry, biology and physics to study the molecular mechanisms that sustain life or dysfunctions leading to diseases.
The Laboratory of Biomolecules (LBM, Sorbonne University, Paris; https://www.ens.psl.eu/en/laboratoire/laboratoire-des-biomolecules-umr-7203) projects are essentially devoted to the design of new strategies and/or tools in analytical chemistry, organic, inorganic, bio-organic, bio-inorganic, biophysics, biochemistry, biology and physiopathology, in order to observe, understand and even control the fundamental mechanisms of living organisms, and to analyze at the molecular level the specific dysfunctions associated with human pathologies.
The post-doc fellow will be supervised by Dr. Céline Landon, leader of the “NMR of Biomolecules: antimicrobials, toxins and metabolites” team at the Centre de Biophysique Moléculaire. Solid-state NMR experiments will be carried out at the LBM (Paris) under the supervision of Dr. Dror Warschawski.
For fluorescence microscopy, the post-doc will have easy access to the P@cyfic/MO2VING platform (CBM, CNRS, Orléans; http://cbm.cnrs-orleans.fr/en/mo2ving/pcyfic-cellular-imaging-and-flow-cytometry/. For solid-state NMR experiments, he/she will have access to the NMR platform at Sorbonne University, Paris; https://rmn.sorbonne-universite.fr/fr/index.html).
The ANR ANTARBioTic project “Deciphering the mechanisms of action of the salt-insensitive king penguin defensins to fulfill the Global One Health Needs”, involves two others Partners: Institut for Advanced BioSciences, Université Grenoble Alpes, Biopark Archamps, France, and Institut Pluridisciplinaire Hubert Curien, University of Strasbourg, France.

Constraints and risks

The post-doctoral s fellow ‘s missions will be carried out mainly at the CBM in Orléans (around 2/3 of the time), with assignments at the LBM in Paris, 1 hour away by train.