Postdoc in Ancient Human and Pathogen Genomics

KU - SCIENCE - SNM; Denmark; On-site; DKK 384,000 - 480,000; Full time

Benefits offered by this job

Parental leave schemes

Reduced tax scheme

Support for international researchers

Job summary

The University of Copenhagen’s Globe Institute invites applications for a two-year postdoctoral position in Ancient Human and Pathogen Genomics in the Sikora lab at GeoGenetics. The successful candidate will apply robust bioinformatic and statistical tools to ancient pathogen DNA and carry out evolutionary and phylogenomic analyses.

They will collaborate across archaeology, history, and bioinformatics, contribute to manuscript preparation, supervise students when possible, and participate in the

Qualifications

• A PhD in bioinformatics, computational biology, genomics, evolutionary biology, health sciences, or a closely related quantitative field.
• Strong experience in the computational analysis of large-scale sequencing or metagenomic datasets.
• Proven ability to perform population genomic, evolutionary, and phylogenomic analyses of ancient DNA datasets
• High proficiency in data analysis and statistical programming using R and/or Python.
• Experience working in high-performance computing (HPC) environments for large-scale analyses and with workflow management tools such as Snakemake or Nextflow.
• Solid understanding of next-generation sequencing (NGS) data characteristics, limitations, and sources of bias, particularly in low-coverage or degraded DNA datasets.
• Strong analytical and critical-thinking skills, with the ability to translate complex genomic results into biological insight.
• Excellent written and verbal communication skills in English.

Responsibilities

• Applying robust bioinformatic and statistical methods to detect, authenticate, and analyse ancient pathogen DNA from large-scale ancient metagenomic shotgun sequencing datasets.
• Performing evolutionary, population genomic, and phylogenomic analyses to jointly investigate human and pathogen diversity through time.
• Leading and contributing to the preparation of manuscripts and the dissemination of research findings in scientific journals.
• Collaborating closely with laboratory scientists, bioinformaticians, archaeologists, and historians in a highly interdisciplinary research setting.
• Assisting in the supervision of graduate students and actively contributing to the intellectual and collaborative life of the research group.

Skills

Bioinformatics

Computational biology

Genomics

Population genomics

Phylogenomics

R/Python

HPC environments

NGS data handling

Education

PhD in bioinformatics

PhD in computational biology

PhD in genomics

PhD in evolutionary biology

Tools

Snakemake

Nextflow

R

Python

HPC

Job description

Postdoc in Ancient Human and Pathogen Genomics

Section for GeoGenetics
Globe Institute

Faculty of Health and Medical Sciences

University of Copenhagen

We are looking for a highly motivated and dynamic postdoc for a 2-year position to commence on 15 November 2026 or as soon as possible thereafter. The postdoc will be part of the Sikora lab group, based at the Section for GeoGenetics and will be part of the Ancient Genomics Initiative for the Evolutionary Understanding of Human Diseases (Apollo).

Information on the department can be found at https://globe.ku.dk .

Our research

The APOLLO Ancient Genomics Initiative is a pioneering research program led by Associate Professor Martin Sikora. It brings together an interdisciplinary team with the shared goal of uncovering the evolutionary origins of human disease risk through integrated analyses of ancient human, pathogen, and environmental DNA.

The University wishes our staff to reflect the diversity of society and thus welcomes applications from all qualified candidates regardless of personal background.

Your job

As a postdoctoral researcher, you will work in a highly collaborative and international research environment at the forefront of ancient genomics. Your main responsibilities will include:

• Applying robust bioinformatic and statistical methods to detect, authenticate, and analyse ancient pathogen DNA from large-scale ancient metagenomic shotgun sequencing datasets.
• Performing evolutionary, population genomic, and phylogenomic analyses to jointly investigate human and pathogen diversity through time.
• Leading and contributing to the preparation of manuscripts and the dissemination of research findings in scientific journals.
• Collaborating closely with laboratory scientists, bioinformaticians, archaeologists, and historians in a highly interdisciplinary research setting.
• Assisting in the supervision of graduate students and actively contributing to the intellectual and collaborative life of the research group.

Profile

We are looking for a highly motivated and enthusiastic scientist with the following competencies and experience:

• A PhD in bioinformatics, computational biology, genomics, evolutionary biology, health sciences, or a closely related quantitative field.
• Strong experience in the computational analysis of large-scale sequencing or metagenomic datasets.
• Proven ability to perform population genomic, evolutionary, and phylogenomic analyses of ancient DNA datasets
• High proficiency in data analysis and statistical programming using R and/or Python.
• Experience working in high-performance computing (HPC) environments for large-scale analyses and with workflow management tools such as Snakemake or Nextflow.
• Solid understanding of next-generation sequencing (NGS) data characteristics, limitations, and sources of bias, particularly in low-coverage or degraded DNA datasets.
• Strong analytical and critical-thinking skills, with the ability to translate complex genomic results into biological insight.
• Excellent written and verbal communication skills in English.

Desirable experience and skills:

• Ability to work independently while contributing effectively to a fast-paced collaborative, and interdisciplinary research environment.
• Experience integrating genomic data with archaeological, historical, environmental, or epidemiological metadata.

Place of employment

The place of employment is at the Section for GeoGenetics, Globe Institute, Øster Voldgade 5-7, 1350 Copenhagen

About Globe Institute

The Globe Institute is part of the Faculty of Health and Medical Sciences at the University of Copenhagen. The Institute’s main purpose is to address basic scientific questions through interdisciplinary approaches. The institute operates at the intersection of natural and medical sciences and the humanities. Information on the institute can be found at: http://www.globe.ku.dk/ .

See website for more information. All qualified applicants will receive full consideration. Candidates who, through their research, teaching, and/or service, contribute to diversity and competencies of our Institute are encouraged to apply.

Benefits

• The University of Copenhagen strives to offer a family friendly and flexible working environment with a sustainable balance between work- and private life, including parental leave schemes (up to 47 weeks for both parents) and up to six weeks of paid holidays per year.
• Researchers that have not been tax liable in Denmark for the last 10 years can apply for a special (reduced) tax scheme.
• The university offers a variety of services for international researchers and accompanying families.

Terms of employment

The position is covered by the Memorandum on Job Structure for Academic Staff.

Terms of appointment and payment accord to the agreement between the Ministry of Finance and The Danish Confederation of Professional Associations on Academics in the State.

There will be an opportunity to negotiate supplements based on qualifications. You can read more about salary levels in the state sector www.loenoverblik.dk (in Danish)

Questions

For further information please contact Martin Sikora at [e-mail] .

Foreign applicants may find this link useful: www.ism.ku.dk (International Staff Mobility).

Arbejdstid: Dag