Metabolomics Data Scientist

DTU — Technical University of Denmark; København; On-site; DKK 650,000 - 900,000; Full time

Job summary

The metabolomics data scientist will develop and maintain LC-MS-based metabolomics data and annotation pipelines, while supporting omics analyses and data infrastructure at the Department of Nutrition, Exercise and Sports, University of Copenhagen. You will contribute to training students and staff and collaborate across teams in an international environment.

We seek an experienced candidate with several years in metabolomics data analysis, strong programming skills in R and Shiny, and

Qualifications

• PhD or at least 3 years in metabolomics or related discipline.
• In-depth knowledge of LC-MS-based metabolomics analyses and annotation.
• Experience developing or contributing to MS-based software.
• Proficiency in R, Shiny, Linux and Docker.
• Experience with data management and FAIR data principles.
• Excellent communication skills in English.
• Teaching experience in metabolomics is an advantage.
• Wet-lab experience in metabolomics is an advantage.

Responsibilities

• Develop and maintain LC-MS metabolomics data and annotation pipelines.
• Maintain data infrastructure, SOPs and workflows; support omics analyses.
• Collaborate with colleagues to ensure high-quality metabolomics data and results.
• Train students and staff in metabolomics data analyses.

Skills

Metabolomics analysis

LC-MS pipelines

English communication

Academic teaching

Team collaboration

Education

PhD or 3+ years in metabolomics

Tools

R

Shiny

Docker

Linux

Job description

The position and responsibilities

The metabolomics data scientist’s duties will primarily include development of our LC-MS-based metabolomics data and annotation pipelines. This includes maintenance and development of LC-MS data pipelines, maintenance of data infrastructure, and standard operating procedures and workflows, as well as support of omics-analyses in close collaboration with colleagues. The metabolomics data scientist is also expected to contribute to training students and staff in metabolomics data analyses.

The ideal candidate

We are looking for an experienced candidate that thrives in an academic environment, that finds joy in helping others and satisfaction in delivering smooth LC-MS pipelines, making sure researchers obtain high-quality metabolomics data and results.

The ideal candidate is a team player with a very strong drive and several years of experience in metabolomics data analysis.

Requirements, qualifications, and evaluation criteria

We expect you to have:

• A PhD degree or at least three years of experience in metabolomics or related discipline.
• In-depth knowledge and extensive experience with liquid chromatography-based metabolomics data analyses and annotation
• Experience and a proven track record of developing or contributing to mass-spectrometry based software
• Extensive experience in the R programming language, Shiny, Linux and docker
• Experience with data management and FAIR data principles
• Excellent communication skills in both written and spoken English
• Prior teaching experience in metabolomics is an advantage
• Prior wet-lab experience in metabolomics is an advantage

The research environment

You will be part of the Nutrition, Microbiome and Metabolomics Research Group headed by Associate Professor Henrik Munch Roager at Department of Nutrition, Exercise and Sports, Faculty of Science at University of Copenhagen. We offer a dynamic, sociable, collaborative, and international environment with several exiting ongoing projects. The group conducts metabolomics and cohort- and intervention studies concerning nutrition, microbiome and health.

The research group is also affiliated to the Copenhagen Gut Microbiome Hub, which brings together the region’s leading scientists, researchers and industry professionals dedicated to leverage the gut microbiome to improve health.

The University is situated in Copenhagen, which is consistently rated among the world's top 10 most livable and sustainable cities. Life for families is made easier via a publicly supported daycare and healthcare system, dual-career opportunities, maternity/parental leave, and six weeks of annual vacation. International candidates may find useful information on living and working in Denmark. Useful information is also available at the university’s International Staff Mobility (ISM) office, which offers a variety of services to international researchers coming to and working at the University of Copenhagen.

Place of employment

The place of employment is the Department of Nutrition, Exercise and Sports, Faculty of Science, University of Copenhagen, located in the heart of Copenhagen. You can read more about the department at www.nexs.ku.dk/english

Terms of salary and employment

The appointment as Metabolomics Data Scientist is positioned as Special Consultant and is a full-time position until December 31st, 2028. The start date is 15th of January, 2027 or as soon as possible thereafter. Working hours will be 37 hours per week on average.

Employment will be in accordance with The Circular on the Collective Agreement concerning Academics in the state sector concluded between the Danish Ministry of Taxation and Akademikerne (the Danish Confederation of Professional Associations). Furthermore there is a possibility to negotiate supplements based on qualifications and experience.

Questions

For further information about the job description and qualifications, please contact Associate Professor Henrik Munch Roager,

Application

The application must include the following:

• Letter of application/motivation (max 1 page)
• Your CV, including education, previous employment and experiences, language skills and other relevant skills
• Copy of relevant certificates/diplomas.
• Complete publication list

Deadline for application is October 1, 2026

We reserve the right not to consider material received after the deadline and not to consider applications that do not meet the abovementioned requirements.

The University of Copenhagen wishes to reflect the diversity of society and welcome applications from all qualified candidates regardless of personal background.