Bioinformatician

Avitia; Montreal; On-site; CAD 80,000 - 100,000; Full time

Job summary

A healthcare technology company in Montreal is seeking a Bioinformatician to join their Bioinformatics team. You will analyze genomic sequencing data and design analytics tools to support quality control. The ideal candidate holds a PhD in a related field and has over 2 years of experience in cancer genomics, along with proficiency in Python and familiarity with NGS analysis. This is a full-time, mid-senior level position with significant impact on cancer care.

Qualifications

• 2+ years of industry experience in a clinical or research setting, including cancer genomics.
• Over 3 years of experience with standard NGS analysis, including quality control and assurance.
• Highly meticulous in analysis execution.

Responsibilities

• Develop and document genome sequencing data analysis pipelines and algorithms.
• Contribute to management of the bioinformatics code base and perform code reviews.
• Collaborate with laboratory personnel on NGS research and development activities.

Skills

Proficient in Python

Experienced with command-line interfaces

Familiar with GitHub

Strong knowledge of statistical techniques

Attention to detail

Education

PhD or equivalent in bioinformatics, data science, biostatistics, genetics, genomics

Tools

AWS

Job description

We believe everyone with cancer should have the same fighting chance to survive and thrive. We work in a rapidly evolving field that attracts smart, talented people who are committed to making a difference for cancer patients. But not everyone has access to the latest advances. People who join us are committed to bringing equity to critical aspects of cancer care. We are a lean and driven team building on this vision from the ground up. You’re a self-starter who can pitch in right away by deploying your own expertise to make this shared vision a reality.

The Bioinformatician is a part of our Bioinformatics team, which leads the bioinformatics research and development program at Avitia. Reporting to the Senior Manager of Bioinformatics, you will perform analysis of genomic sequencing data using leading-edge DNA sequencing technologies and computational methods. You will also design and implement analytics tools and reports to support quality control and quality assurance. Your work directly helps identify targeted treatments and clinical trials that can benefit cancer patients in a robust and quality-assured manner. You will work independently as well as collaboratively with software programmers, database developers, other bioinformaticians, and laboratory personnel.

What you’ll do :

1. Develop, evaluate, manage, and document genome sequencing data analysis pipelines, algorithms, and statistical models for novel and proprietary cancer-focused next-generation sequencing (NGS) assays.
2. Contribute to the management of the bioinformatics code base, including upholding standards, best practices, and performing code reviews.
3. Work closely with the software development team to assess, evaluate, and optimize data analysis pipelines, and validate results.
4. Collaborate with laboratory personnel to design, analyze, and interpret NGS research and development activities.
5. Assist with deploying, optimizing, and troubleshooting clinical assays with global partners.
6. Contribute to designing, implementing, and reporting on quantitative quality control and assurance processes from NGS output to ensure clinically robust results.
7. Design and generate validation studies and reports for clinical accreditation.
8. Collect and present data in plots and tables for clinical quality control, surveillance, external collaborations, and support for Business Development and Marketing teams.

Who you are :

1. Education: You hold a PhD or equivalent in bioinformatics, data science, biostatistics, genetics, genomics, or a related field.
2. Industry experience: 2+ years in a clinical or research setting, including cancer genomics.
3. Coding: Proficient in Python.
4. Linux / UNIX: Experienced with command-line interfaces.
5. NGS: Over 3 years of experience with standard NGS analysis, including quality control and assurance.
6. Tech-savvy: Familiar with GitHub and cloud computing platforms such as AWS.
7. Analytical skills: Strong knowledge of statistical techniques and large data set analysis.
8. Attention to detail: Highly meticulous in analysis execution.

Seniority level: Mid-Senior level

Employment type: Full-time

Job function: Research, Analyst, and Information Technology