Sr. Data Scientist, Assay Development

DELFI Diagnostics

Palo Alto (CA)

On-site

USD 150,000 - 220,000

Full time

6 hours ago

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Benefits offered by this job

Flexible time-off policy

401(k) retirement plan

Medical, dental, vision coverage

Onsite lunch 3 days a week

Wellness offerings

Job summary

DELFI Diagnostics, Inc. is seeking a Senior Data Scientist to collaborate with cross-functional teams to develop statistical methods for early cancer detection assays. The role spans assay development, analytical validation, QC strategy, and regulatory submissions.

The ideal candidate has a strong background in probability and statistics, is experienced in Python, and has worked in regulated diagnostics. Collaboration across lab operations, engineering, and software is essential, with emphasis

Qualifications

Master's or higher in a quantitative field; PhD preferred.
5+ years of scientific data analysis experience; 3+ years in Python.
Strong foundations in probability theory and statistics.
Experience in regulated diagnostics (IVD/LDT) including documentation.
Ability to translate complex analyses for cross-functional/regulatory audiences.

Responsibilities

Design analyses for assay development, analytical validation, and QC strategies in regulated diagnostics.
Collaborate with assay development, lab ops, and software teams to design experiments and document results.
Contribute to control strategy development with qualification and monitoring frameworks for reagents, instruments, and QC.
Provide operational data science support for production and run monitoring, troubleshoot performance issues and trending QC metrics.
Produce high-quality Python code following team standards.
Support regulatory submissions with rigorous, well-documented analyses.

Skills

Python (numpy/pandas)

Statistics

Hypothesis testing

Regulated diagnostics

Data analysis

Machine learning basics

Education

Master's degree in Applied Math, Statistics, Bioinformatics, Engineering

PhD preferred

Tools

NGS data QC

Design of Experiments

Six Sigma

Job description

DELFI Diagnostics, Inc. (DELFI Diagnostics) is developing next-generation, blood-based tests that are reliable, accessible and deliver a new way to help detect cancer. Employing advanced machine-learning methods to whole-genome sequencing data, the DELFI ("DNA EvaLuation of Fragments for early Interception") platform is built to address the highest-burden health challenges. DELFI Diagnostics prioritizes solutions that have the potential to save lives on a global scale, including for historically underserved populations. DELFI Diagnostics’ platform relies on fragmentomics – the discovery that cancer cells are more chaotic than normal cells and, when they die, leave behind tell-tale patterns and characteristics of cell-free DNA (cfDNA) fragments. FirstLook Lung, for individuals eligible for lung cancer screening, is DELFI Diagnostics’ first laboratory-developed screening test and can be part of routine blood work. FirstLook Lung uses millions of data points to reliably identify individuals who may have cancer detected through low-dose CT, including early stage disease with a negative predictive value of 99.8 percent. This test has not been cleared or approved by the FDA.

In our passionate pursuit to radically improve health outcomes, we serve humanity when we:

Lead with Science, Anchor in Pragmatism

Build With & For All

Put We over I

DELFI has 1-2 designated in-office working days each week for employees who live within within 50 miles of Palo Alto, CA

About the Role:

The Senior Data Scientist will collaborate with a cross-functional team of laboratory scientists, clinicians, engineers, and other data scientists to develop statistical analysis methods supporting early cancer detection assays. This role spans assay development, analytical validation, and QC and control strategy, contributing to products advancing through verification, validation, and regulatory submission toward clinical use. The ideal candidate brings strong foundations in probability theory and statistics, applied experience in a regulated diagnostics or similarly rigorous data environment, and the ability to translate complex analyses into clear documentation for cross-functional and regulatory audiences.

What You'll Do

Design and execute analyses supporting assay development, analytical validation, and QC and control strategy, applying statistical methods appropriate to regulated diagnostic development
Collaborate cross-functionally with assay development, lab operations, and software teams to design experiments, interpret results, and produce documentation meeting quality system and regulatory standards.
Contribute statistical and data science expertise to control strategy development, including qualification and monitoring frameworks for reagents, instruments, and sample level QC.
Provide operational data science support for production and LDT/IVD run monitoring, including troubleshooting assay performance issues, trending QC metrics, and supporting root cause investigations.
Produce high quality Python code following best practices established by the software development team.
Support regulatory submissions (CLIA/CAP, NYS, FDA as applicable) with rigorous, well documented analysis.

What You'll Bring

Required:

Master's degree in Applied Math, Statistics, Bioinformatics, Engineering, or a related quantitative field; PhD preferred.
Five or more years of practical experience in scientific or mathematical data analysis, with at least three years in Python (numpy, pandas, and similar).
Strong foundations in probability theory and statistics, including hypothesis testing, confidence intervals, parameter estimation, and variance components.
Experience working in a regulated diagnostics environment (IVD, LDT, or similar), including designing and executing rigorous studies and analyses and documenting them appropriately.
Ability to connect assay chemistry to data behavior, applying this understanding to troubleshoot assay performance issues.

Preferred experience:

Exposure to NGS based assay development, including familiarity with sequencing data QC and batch level variability.
Experience analyzing high dimensional genomic or molecular data.
Familiarity with common machine learning techniques and practical experience with implementation and validation.
Familiarity with Design of Experiments and related quality methodologies (measurement systems analysis, control charts, Six Sigma/DMAIC).

We are an equal opportunity employer and value diversity at our company. We do not discriminate on the basis of race, religion, color, national origin, gender, sexual orientation, age, marital status, veteran status, or disability status.

Actual base pay will consider experience, skillset, education, and geography.

This role may be eligible for other forms of compensation, including an annual bonus and a new hire equity grant, subject to the terms of the applicable plans and Company discretion. All employees are also eligible for DELFI's comprehensive and competitive benefits package, including but not limited to: