Sr. Bioinformatics Scientist

Thornton Tomasetti; United States; On-site; USD 90,000 - 180,000; Full time

Benefits offered by this job

Career development

Free medical coverage in HIP PPO plan

Excellent retirement savings plan

Tuition reimbursement and education

Diversity recognition

Job summary

Abbott, a global healthcare leader, seeks a Senior Bioinformatics Scientist in La Jolla, CA. You will lead and mentor teams on complex R&D projects in Cancer Diagnostics, focusing on germline variant calling and NG sequencing pipelines for diagnostic development.

You’ll collaborate across disciplines, develop machine learning models, and guide junior scientists while advancing innovative diagnostic technologies.

Qualifications

• Ph.D. in bioinformatics, computational biology, computer science, mathematics, or related field (or Master’s + required experience).
• 5+ years of bioinformatics experience.
• 3+ years in medical device/IVD, biotech, life science or pharmaceutical industry.
• Proficient in Linux HPC or cloud environments.
• Ability to write code in at least three programming or scripting languages.
• Knowledge of NGS, genomics, and statistics (R/JMP).

Responsibilities

• Algorithm development to improve germline variant calling.
• Build bioinformatics pipeline prototypes for germline sequencing.
• Develop ML models to support variant classification and clinical significance predictions.

Skills

Bioinformatics

Genomics

Python

R

Linux HPC

Education

Ph.D. in bioinformatics or related field

M.S. + 4 years experience (in lieu of PhD)

B.S. in bioinformatics/related + 6 years experience

Tools

Nextflow

AWS

JMP

Job description

Abbott is a global healthcare leader that helps people live more fully at all stages of life. Our portfolio of life-changing technologies spans the spectrum of healthcare, with leading businesses and products in diagnostics, medical devices, nutritionals and branded generic medicines. Our 122,000 colleagues serve people in more than 160 countries.

Job Description

Working at Abbott At Abbott, you can do work that matters, grow, and learn, care for yourself and your family, be your true self, and live a full life.

Benefits

• Career development with an international company where you can grow the career you dream of.
• Employees can qualify for free medical coverage in our Health Investment Plan (HIP) PPO medical plan in the next calendar year.
• An excellent retirement savings plan with a high employer contribution.
• Tuition reimbursement, the Freedom 2 Save student debt program, and FreeU education benefit - an affordable and convenient path to getting a bachelor’s degree.
• A company recognized as a great place to work in dozens of countries worldwide and named one of the most admired companies in the world by Fortune.
• A company that is recognized as one of the best big companies to work for as well as the best place to work for diversity, working mothers, female executives, and scientists.

The Opportunity

This position works out of our La Jolla location in the Cancer Diagnostics division. As the Senior Bioinformatics Scientist, you’ll have the chance to work in collaboration with others on one or more projects which are complex in scope. The Senior Bioinformatics Scientist participates in or leads planning of projects and analyses and is often the bioinformatics lead responsible for the successful execution of the project. This position involves independently making detailed observations, analyzing data, interpreting results, and providing insights into the next steps and direction of the project, as well as independently determining methods and procedures on new assignments or projects. Working in a team setting, the Senior Bioinformatics Scientist will be involved in Research and Development projects serving as a technical lead and/or a subject matter expert in exploring and researching new technologies, providing ideas and concepts to improve or develop processes, and/or establish methods and processes for product development towards development of diagnostic assay products. The Senior Bioinformatics Scientist will mentor and provide technical guidance to junior scientists in project teams.

What You’ll Work On

• Algorithm development to improve sensitivity of germline variant calling.
• Building bioinformatics pipeline prototypes to support germline sequencing.
• Development of Machine learning models to support variant classification and clinical significance predictions.

Minimum Qualifications

• Ph.D. in bioinformatics, computational biology, computer science, mathematics, or related field; or Master’s degree in bioinformatics, computational biology, computer science, mathematics, or related field plus 4 years of experience in lieu of a Ph.D.; or Bachelor’s degree in bioinformatics, computational biology, computer science, mathematics, or related field plus 6 years of experience in lieu of Ph.D.
• 5+ years of industry or academia experience in bioinformatics.
• 3+ years of experience in medical device/IVD, biotech, life science or pharmaceutical industry.
• Extensive experience in Linux-based HPC or cloud computing environments and associated tools.
• Ability to write custom code in at least three programming or scripting languages.
• Technical expert in the area of molecular biology and/or biochemistry and/or next-generation sequencing (NGS) and genomics.
• Knowledge of product/assay research, design, or development.
• Working knowledge of statistical and mathematical methods in biology/genetics, including experience with statistical software, such as JMP or R.
• Basic computer skills to include Internet navigation, Email usage, and word processing.
• Proficient in Microsoft Office to include Excel and Word and PowerPoint.
• Demonstrated ability to perform the essential duties of the position with or without accommodation.
• Applicants must be currently authorized to work in country where work will be performed on a full time or part-time basis.
• We are unable to sponsor or take over sponsorship of employment visas at this time.

Preferred Qualifications

• 8+ years of experience in medical device/IVD, biotech, life science or pharmaceutical industry.
• Previous industry experience in product development or technical support.
• Background containing a substantial amount of bioinformatics work including troubleshooting.
• Previous experience working in a molecular diagnostics/clinical laboratory setting.
• Variant calling (SNV/CNV/SV) experience in algorithm development/building pipelines.
• Experience with NextFlow to create NGS pipelines.
• Experience with AWS or other similar cloud platforms.
• Experience with whole exome/targeted panel.
• Experience with comprehensive genomic profiling panel design and data analysis.
• Machine learning and AI.

Job Details

The base pay for this position is $90,000.00 – $180,000.00. In specific locations, the pay range may vary from the range posted.

• JOB FAMILY: Research and Discovery
• DIVISION: ONCO Cancer Diagnostics
• LOCATION: United States > La Jolla : Torrey Pines Science Park
• ADDITIONAL LOCATIONS:
• WORK SHIFT: Standard
• TRAVEL: Yes, 5 % of the Time
• MEDICAL SURVEILLANCE: No
• SIGNIFICANT WORK ACTIVITIES: Continuous sitting for prolonged periods (more than 2 consecutive hours in an 8 hour day), Keyboard use (greater or equal to 50% of the workday)

Equal Opportunity & EEO

Abbott is an Equal Opportunity Employer, committed to employee diversity.

Abbott is an Equal Opportunity Employer of Minorities/Women/Individuals with Disabilities/Protected Veterans.

EEO is the Law link - English: http://webstorage.abbott.com/common/External/EEO_English.pdf

EEO is the Law link - Espanol: http://webstorage.abbott.com/common/External/EEO_Spanish.pdf

Abbott is about the power of health. For more than 135 years, Abbott has been helping people reach their potential because better health allows people and communities to achieve more. With a diverse, global network serving customers in more than 160 countries, we create new solutions across the spectrum of health, around the world, for all stages of life. Whether it’s next-generation diagnostics, life‑changing devices, science‑based nutrition, or novel reformulations, we are advancing some of the most innovative and revolutionary technologies in healthcare, helping people live their best lives through better health. The people of Abbott come to work each day with relentless energy, enthusiasm and a promise to enhance the health and well‑being of millions of people. They push the boundaries to help manage and treat some of life’s greatest health challenges. We invite you to explore opportunities at Abbott, to see if your talents and career aspirations may fit with our openings. An equal opportunity employer, Abbott welcomes and encourages diversity in our workforce.

Connect with us at abbott.com, on LinkedIn at https://www.linkedin.com/company/abbott-/, and on Facebook at https://www.facebook.com/AbbottCareers.

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Health and Wellness Benefits

Learn more about our health and wellness benefits, which provide the security to help you and your family live full lives: https://abbottbenefits.com/

Follow your career aspirations to Abbott for diverse opportunities with a company that can help you build your future and live your best life.