Software Engineer II - GTEx Group

Broad Institute of MIT and Harvard; Cambridge (MA); On-site; USD 92,000 - 123,000; Full time

Benefits offered by this job

Medical, dental, vision insurance

401(k) retirement plan

Flexible spending and health savings

13 paid holidays

Paid time off

Parental and family care leave

Employee assistance program

Job summary

The Broad Institute's GTEx Portal team seeks an experienced full-stack software engineer to design and build a robust data portal for researchers worldwide. The portal is a cloud-based web app deployed on Google Cloud Platform, with REST-style services and a modern JavaScript/D3.js user interface.

You will collaborate with scientists and engineers, design data models, deploy to the cloud, and help scale a production-grade portal used by thousands of monthly users.

Qualifications

• Bachelor's degree in computer science or related field.
• 2+ years of professional software engineering experience.
• Full-stack web development experience and cloud familiarity.
• Strong communication skills and a collaborative mindset.
• Proficiency with TypeScript/JavaScript, React or Vue3, HTML5 and CSS Modules.
• Experience with data visualization libraries such as D3.

Responsibilities

• Work in a small team to enhance the GTEx Portal.
• Design and implement a production-grade, full-stack web portal.
• Develop large, complex frameworks and RESTful services.
• Research and recommend frameworks and libraries.
• Deploy applications to the cloud and monitor health.
• Design data models and RESTful endpoints.
• Participate in code reviews and apply feedback.
• Help users and collaborate with scientists and engineers.

Skills

Full-stack web development

Cloud computing

Excellent communication

Design aesthetics

Problem solving

Learning mindset

Education

Bachelor's degree in Computer Science or related field

Tools

Pandas/Polars

Google Cloud Platform (GKE, App Engine, GCS)

TypeScript/JavaScript

React

Vue3

HTML5

CSS Modules

D3.js

Job description

The Genotype-Tissue Expression (GTEx; http://gtexportal.org) group at the Broad Institute is looking for exceptional candidates to join these efforts, with a focus on characterizing how genetic variation regulates gene expression across cell types, tissues, developmental stages, and species, towards the goal of characterizing the function of genetic variants and genes in human diseases and traits. The successful candidate will join an interdisciplinary team working with an unprecedented set of sequencing data from a wide range of tissues and cell types, including from state-of-the-art multi-omic single-cell assays.

We are looking for an experienced full-stack software engineer to help us design and build a robust data portal that enables researchers across the world to accelerate advances in scientific understanding. The GTEx Portal is used by researchers, pharmaceutical companies, and clinicians to search, download, and visualize our gene expression and quantitative trait loci data. The GTEx Portal is a modern, cloud-based web application deployed on the Google Cloud Platform, with REST-style services and an innovative JavaScript and D3.js user interface.

We are looking for individuals who are enthusiastic about taking a hands‑on, problem‑solving approach, and collaborating with scientists and engineers in an informal and collegial work environment that is infused with intellectual rigor. The right candidate will have an outstanding academic record and strong communication skills and will demonstrate innovative and analytical thinking. The Broad Institute provides a vibrant research environment with close links to MIT, Harvard, and the Harvard-affiliated hospitals across Boston. The position provides the potential for your contributions to be utilized and recognized across a global network of researchers participating in these efforts, and by the thousands of monthly users of the GTEx Portal.

Characteristic Duties

• Work in a collaborative setting with a small team of developers and biologists to enhance the GTEx Portal.
• Assist in the design and implementation of a high-quality, production-grade, full-stack web portal.
• Assist in the design and development of large, complex frameworks.
• Research and recommend frameworks and libraries.
• Deploy applications to the cloud and monitor health.
• Design and implement data models.
• Design and implement RESTful web services.
• Participate in code reviews and apply feedback to subsequent work.
• Proactively identify obstacles or problems and recommend improvements.
• Effectively and graciously answer questions from GTEx Portal users.
• No genomics or biology background is required, but candidates should have a demonstrated desire to learn and contribute to biology and the life sciences.

Requirements

• Bachelor’s degree in computer science or related field.
• 2+ years of professional experience as a software engineer, demonstrating sound engineering judgment.
• Demonstrated skill in designing, implementing, and documenting software engineering components.
• Excellent oral and written communication skills.
• Full-stack web development experience.
• Proficient in the modern typed Python stack, including the Pandas/Polars library.
• Proficient in cloud computing, preferably with the Google Cloud Platform (GKE, App Engine, GCS).
• Working knowledge of the modern web development stack, including Typescript/JavaScript, React or Vue3, HTML5, and CSS Modules.
• Working knowledge of data visualization libraries such as D3.
• Good sense of design aesthetics.
• Takes pride in their work.

Preferred / Optional Qualifications

• Experience with Pydantic and FastAPI.
• Experience using UI component explorers like StoryBook.

Pay Range: $92,000.00/yr - $122,667.00/yr

The expected base pay range for this position as listed above is based on a 40 hour per week schedule. Broad provides pay ranges representing its reasonable and good faith estimate of what the organization reasonably expects to pay for a position at the time of posting. Actual compensation will vary based on factors including but not limited to, relevant skills, experience, education, qualifications, and other factors permissible by law.

From day one, this role offers a competitive benefits package

• medical, dental, vision, life, and disability insurance
• a 401(k) retirement plan
• flexible spending and health savings accounts
• at least 13 paid holidays
• winter closure
• paid time off
• parental and family care leave
• an employee assistance program, among other Broad benefits

The Broad Institute is an equal opportunity employer. All qualified applicants will receive consideration for employment without regard to race, national origin, religion, age, color, sex, disability, protected veteran status, or any other characteristic protected by local, state, or federal laws, rules, or regulations.

Should you need a reasonable accommodation to complete the application or interview process, please contact [e-mail] for assistance.