Senior Data Scientist - Genetics

Trustees of University of Pennsylvania; Philadelphia (Philadelphia County); On-site; USD 100,000 - 160,000; Full time

Benefits offered by this job

Health & Life benefits

Tuition benefits

Retirement plans

Time off

Long-term care

Wellness resources

Development support

University resources

Discounts & services

Flexible hours

Home ownership assistance

Adoption assistance

Job summary

University of Pennsylvania's Perelman School of Medicine seeks a Senior Data Scientist for clinical genomic pipeline design and implementation. You will work with statisticians, data scientists, clinicians and bioinformaticians to develop quantitative strategies that improve diagnosis of genetic disorders at large scale.

Strong candidates have an MSc with 1–2 years of experience (PhD preferred), and are proficient in R, Python or Perl, with UNIX/Linux and cloud/HPC experience to support

Qualifications

• Master of Science and 1 to 2 years of experience, or an equivalent combination of education and experience required.
• Ph.D. preferred.
• Experience with implementation skills in at least one of R, Perl or Python.
• Comfortable in UNIX/Linux environments and producing well-documented code.
• Multi-year experience (>10 years) with cloud-computing or HPC is essential.

Responsibilities

• Develop and extend computational pipelines for data-analysis to patient cohorts ranging from tens to hundreds of thousands.
• Design and implement new quantitative strategies to improve understanding and diagnosis of genetic disorders.
• Collaborate with statisticians, data scientists, clinicians and bioinformaticians to ensure insights are broadly adopted.

Skills

R

Python

Perl

UNIX/Linux

Cloud computing

HPC

Communication skills

Education

Master's degree in related field

PhD preferred

Job description

University Overview

The University of Pennsylvania, the largest private employer in Philadelphia, is a world-renowned leader in education, research, and innovation. This historic, Ivy League school consistently ranks among the top 10 universities in the annual U.S. News & World Report survey. Penn has 12 highly-regarded schools that provide opportunities for undergraduate, graduate and continuing education, all influenced by Penn’s distinctive interdisciplinary approach to scholarship and learning. As an employer Penn has been ranked nationally on many occasions with the most recent award from Forbes who named Penn one of America’s Best Large Employers in 2023.

Penn offers a unique working environment within the city of Philadelphia. The University is situated on a beautiful urban campus, with easy access to a range of educational, cultural, and recreational activities. With its historical significance and landmarks, lively cultural offerings, and wide variety of atmospheres, Philadelphia is the perfect place to call home for work and play.

The University offers a competitive benefits package that includes excellent healthcare and tuition benefits for employees and their families, generous retirement benefits, a wide variety of professional development opportunities, supportive work and family benefits, a wealth of health and wellness programs and resources, and much more.

Posted Job Title

Senior Data Scientist - Genetics

Job Profile Title

Job Description Summary

The UPenn department of genetics is seeking a Senior Data Scientist for clinical genomic pipeline design and implementation.

Job Description

The successful candidate will be working with a broad team of quantitative analysts, including Statisticians, Data Scientists, Clinical and Basic trainees, and other bioinformaticians. Their role will involve developing and implementing new quantitative strategies to improve our understanding and ability to diagnose genetic disorders through a large-scale genomic clinically grade testing. Senior Data Scientists are passionate about applying their knowledge of biology and of methods for molecular, cellular or radiologic data-analysis to uncover general principles of genetic disorders and use these to create clinically useful biomarkers. They will develop, extend and apply computational pipelines for data-analysis to patient cohorts ranging from tens of individuals to hundreds of thousands. These will be executed at scale via distributed software solutions on both local HPC and cloud-based assets. Our datasets comprise petabytes, and are growing rapidly, linked to key clinical endpoints. This requires a strong background in biology to help ensure the right questions are asked, but linked to strong technical and personal communication skills, to help ensure insights are broadly adopted and appropriate analyses are performed. You may work with molecular (WGS, panel-sequencing, RNA-Seq, proteomic) or imaging (digital pathology, radiomic) data, and practical experience in one of these two areas is essential. Beyond your strong inter-personal skills and computer science background, you will have experience with implementation skills at least one of R, Perl or Python. You will be comfortable in UNIX/Linux environments and producing well-documented code. Multi-year experience (>10years) with cloud-computing or HPC is essential.

Master of Science and 1 to 2 years of experience, or an equivalent combination of education and experience required. Ph.D. preferred.

This position is contingent upon grant funding.

Job Location - City, State

Philadelphia, Pennsylvania

Department / School

Perelman School of Medicine

Pay Range

$100,000.00 - $160,000.00 Annual Rate

Salary offers are made based on the candidate’s qualifications, experience, skills, and education as they directly relate to the requirements of the position, and in alignment with salary ranges based on external market data for the job’s level. Internal organization and peer data at Penn are also considered.

Equal Opportunity Statement

The University of Pennsylvania is an equal opportunity employer. Candidates are considered for employment without regard to race, color, sex, sexual orientation, religion, creed, national origin(including shared ancestry or ethnic characteristics), citizenship status, age, disability, veteran status or any class protectedunder applicable federal, state or local law.

Special Requirements

Background checks may be required after a conditional job offer is made. Consideration of the background check will be tailored to the requirements of the job.

University Benefits

• Health, Life, and Flexible Spending Accounts : Penn offers comprehensive medical, prescription, behavioral health, dental, vision, and life insurance benefitsto protect you and your family’s health and welfare. You can also use flexible spending accounts to pay for eligible health care and dependent care expenses with pre-tax dollars.

• Tuition : Take advantage of Penn’s exceptional tuition benefits. You, your spouse, and your dependent children can get tuition assistance here at Penn. Your dependent children are also eligible for tuition assistance at other institutions.

• Retirement: Penn offers generous retirement plans to help you save for your future. Penn’s Basic, Matching, and Supplemental retirement plans allow you to save for retirement on a pre-tax or Roth basis. Choose from a wide variety of investment options through TIAA and Vanguard.

• Time Away from Work: Penn provides you with a substantial amount of time away from work during the course of the year. This allows you to relax, take vacations, attend to personal affairs, recover from illness or injury, spend time with family—whatever your personal needs may be.

• Long-Term Care Insurance: In partnership with Genworth Financial, Penn offers faculty and staff (and your eligible family members) long-term care insurance to help you cover some of the costs of long-term care services received at home, in the community or in a nursing facility. If you apply when you’re newly hired, you won’t have to provide proof of good health or be subject to underwriting requirements. Eligible family members must always provide proof of good health and are subject to underwriting.

• Wellness and Work-life Resources : Penn is committed to supporting our faculty and staff as they balance the competing demands of work and personal life. That’s why we offer a wide variety of programs and resources to help you care for your health, your family, and your work-life balance.

• Professional and Personal Development: Penn provides an array of resources to help you advance yourself personally and professionally.

• University Resources: As a member of the Penn community, you have access to a wide range of University resources as well as cultural and recreational activities. Take advantage of the University’s libraries and athletic facilities, or visit our arboretum and art galleries. There’s always something going on at Penn, whether it’s a new exhibit at the Penn Museum, the latest music or theater presentation at the Annenberg Center, or the Penn Relays at Franklin Field to name just a few examples. As a member of the Penn community, you’re right in the middle of the excitement—and you and your family can enjoy many of these activities for free.

• Discounts and Special Services : From arts and entertainment to transportation and mortgages, you’ll find great deals for University faculty and staff. Not only do Penn arts and cultural centers and museums offer free and discounted admission and memberships to faculty and staff. You can also enjoy substantial savings on other goods and services such as new cars from Ford and General Motors, cellular phone service plans, movie tickets, and admission to theme parks.

• Flexible Work Hours: Flexible work options offer creative approaches for completing work while promoting balance between work and personal commitments. These approaches involve use of non-traditional work hours, locations, and/or job structures.

• Penn Home Ownership Services: Penn offers a forgivable loan for eligible employees interested in buying a home or currently residing in West Philadelphia, which can be used for closing costs or home improvements.

• Adoption Assistance: Penn will reimburse eligible employees on qualified expenses in connection with the legal adoption of an eligible child, such as travel or court fees, for up to two adoptions in your household.

To learn more, please visit: https://www.hr.upenn.edu/PennHR/benefits-pay