Senior Bioinformatics Software Engineer - Scalable Pipelines

Baylor Genetics; United States; Remoto; USD 120.000 - 180.000; Tempo pieno

Descrizione del lavoro

Baylor Genetics in the United States is seeking a Senior Bioinformatics Software Engineer to design, develop, and maintain scalable software for bioinformatics pipelines, collaborating with cross-functional teams to deliver data-driven solutions aligned with business needs.

The role focuses on BI development, data modeling, ETL, API and microservices, dashboards and reports, with emphasis on code quality, testing, and thorough documentation.

Competenze

• Bachelor’s degree in Computer Science, Software Engineering, Bioinformatics or related field; Master’s degree preferred.
• Minimum of 5 years of experience in software development with scalable solutions; production-ready from scratch.

Mansioni

• Design, develop, and maintain robust BI software solutions for Baylor Genetics’ pipelines.
• Create and optimize data models for accurate, high-performance computations in assembly, mapping, variant calling, and annotation.
• Develop and optimize ETL processes to extract, transform, and load data from diverse sources.
• Analyze and optimize SQL queries; contribute to schema design for high performance.
• Build interactive dashboards and automated reports using BI tools and pipelines.
• Collaborate with data analysts, clinical reviewers, lab personnel, and developers to deliver timely integrations.
• Integrate disparate data sources with minimal code debt; ensure data consistency and reliability.
• Conduct rigorous testing and automate test suites using pytest, doctest, and CI/CD pipelines.
• Document solutions and maintain inline comments, wikis, and README files.

Conoscenze

Python

SQL

CI/CD

Git

Data modeling

APIs

Linux

Docker

Kubernetes

Nextflow

Formazione

Bachelor's degree in CS/Software Engineering/Bioinformatics

Master’s degree preferred

Strumenti

Azure

SQL Server

NoSQL/MongoDB

Elasticsearch

Docker

Kubernetes

Git

SNakemake/Nextflow

Descrizione del lavoro

Baylor Genetics in the United States is seeking a Senior Bioinformatics Software Engineer to design, develop, and maintain scalable software for bioinformatics pipelines, collaborating with cross-functional teams to deliver data-driven solutions aligned with business needs.

The role focuses on BI development, data modeling, ETL, API and microservices, dashboards and reports, with emphasis on code quality, testing, and thorough documentation.