Research Software Engineer, Brain Data Science Platform (24-Month Fixed-Term)

Stanford University

Palo Alto (CA)

On-site

USD 130,000 - 180,000

Full time

9 days ago

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Job summary

Stanford University’s Neurology & Neurological Sciences department seeks a Research and Development Scientist and Engineer 1 to build the Sleep Health Data Science Platform. You will design pipelines ingesting EEG, PSG, wearables, imaging, and EHR data, de-identify and standardize, and help deploy an AWS-based platform for research use across Stanford and partner hospitals.

You will become a domain expert in medical data and neurophysiology, tackling challenges from data ingestion to model

Qualifications

Master's degree or PhD preferred in computer/medical informatics or related field.
Three+ years building production data pipelines and backend services, with strong Python.
Experience with cloud infrastructure, preferably AWS, and infrastructure-as-code.
Experience with workflow orchestration (Airflow, Prefect, Nextflow, Snakemake).
Experience with healthcare data standards (HL7/FHIR, DICOM, OMOP/OHDSI) and de-identification.

Responsibilities

Design and develop complex equipment, instruments, or systems for a major project.
Develop technical solutions to complex engineering/scientific problems requiring independent thinking.
Create new equipment, materials, or software to advance the field.
Provide technical direction and perform basic R&D support for programs/projects.
Contribute to publications and prepare scientific reports.
Provide mentorship to research staff and students as needed.

Skills

Python

EHR data handling

Data pipelines

Cloud platforms

Airflow

Docker

Git/GitHub Actions

HL7/FHIR/OMOP/OHDSI

HIPAA compliance

Machine learning deployment

Education

Master's degree or PhD in CS / Biomedical Informatics / Electrical Engineering / Data Science

Tools

AWS (S3, Lambda, Batch/ECS, RDS)

Airflow

Docker

GitHub Actions

HL7/FHIR/OMOP/OHDSI

Job description

The Department of Neurology & Neurological Sciences at Stanford University School of Medicine is building a world-class program at the intersection of artificial intelligence and brain health. The laboratory of Dr. M. Brandon Westover develops and deploys AI systems that interpret brain data at scale — EEG, sleep studies, wearable recordings, neuroimaging, and the electronic health record — to improve diagnosis and treatment in epilepsy, neurocritical care, sleep medicine, and neurology broadly.

We are seeking a Research and Development Scientist and Engineer 1 to serve as a core software engineer for the Sleep Health Data Science Platform, a major component of our Brain Data Science Platform. This is a hands‑on engineering role at the center of a rapidly growing clinical research data ecosystem. You will build the pipelines that bring in EEG, polysomnography, wearable, imaging, and EHR data from Stanford and partner hospitals; make that data safe and usable through automated de‑identification and standardization; and help build the AWS‑based platform that turns it into a research resource for investigators across Stanford and beyond. You will also help move AI models out of the lab and into clinical use, with particular emphasis on AI‑assisted EEG interpretation.

This role suits an engineer who wants to go deep on a domain. You will be expected to become a genuine expert in medical data — how it is generated, what it means clinically, and where it goes wrong — and to bring that expertise to bear on the architecture.

DESIRED QUALIFICATIONS:

Master's degree or PhD preferred, in Computer Science, Biomedical Informatics, Electrical Engineering, Data Science, or a related technical field.
Experience working with electronic health record (EHR) data strongly preferred, including extraction, structuring, and analysis of clinical data from systems such as Epic, and familiarity with clinical data warehouses.
Three or more years building production data pipelines and backend services, with strong proficiency in Python.
Experience with cloud infrastructure, preferably AWS (S3, Lambda, Batch/ECS, RDS, IAM), and with infrastructure-as-code.
Experience with workflow orchestration (Airflow, Prefect, Nextflow, Snakemake, or similar), containerization (Docker), and version control and CI/CD (Git, GitHub Actions).
Experience with healthcare data standards and formats — EDF/EDF+, DICOM, HL7/FHIR, OMOP/OHDSI — and with de-identification of protected health information.
Experience working with large physiological time-series data (EEG, PSG, ECG, actigraphy, or wearable sensor streams) strongly preferred.
Familiarity with HIPAA, IRB, and data use agreement requirements governing human subjects research data.
Experience deploying machine learning models into production or clinical settings, including model serving, monitoring, and EHR integration, desirable.
Demonstrated ability to work independently, scope ambiguous problems, and deliver reliable systems.
Strong written and verbal communication skills, and genuine interest in becoming a domain expert in clinical neurophysiology and medical data.

PHYSICAL REQUIREMENTS*:

Frequently grasp lightly/fine manipulation, perform desk-based computer tasks, lift/carry/push/pull objects that weigh up to 10 pounds.
Occasionally stand/walk, sit, twist/bend/stoop/squat, grasp forcefully.
Rarely kneel/crawl, climb (ladders, scaffolds, or other), reach/work above shoulders, use a telephone, writing by hand, sort/file paperwork or parts, operate foot and/or hand controls, lift/carry/push/pull objects that weigh >40 pounds.

* - Consistent with its obligations under the law, the University will provide reasonable accommodation to any employee with a disability who requires accommodation to perform the essential functions of his or her job.

WORKING CONDITIONS:

May be exposed to high voltage electricity, radiation or electromagnetic fields, lasers, noise > 80dB TWA, Allergens/Biohazards/Chemicals /Asbestos, confined spaces, working at heights ?10 feet, temperature extremes, heavy metals, unusual work hours or routine overtime and/or inclement weather.
May require travel.

WORK STANDARDS:

Interpersonal Skills: Demonstrates the ability to work well with Stanford colleagues and clients and with external organizations.
Promote Culture of Safety: Demonstrates commitment to personal responsibility and value for safety; communicates safety concerns; uses and promotes safe behaviors based on training and lessons learned.
Subject to and expected to comply with all applicable University policies and procedures, including but not limited to the personnel policies and other policies found in the University's Administrative Guide, http://adminguide.stanford.edu.

Responsibilities

Core Duties:

Design and develop complex and specialized equipment,instruments, or systems; coordinate detailed phases of work related toresponsibility for part of a major project or for an entire project ofmoderate scope.
Develop technical and methodological solutions to complexengineering/scientific problems requiring independent analyticalthinking and advanced knowledge.
Develop creative new or improved equipment, materials,technologies, processes, methods, or software important to theadvancement of the field.
Contribute technical expertise, and perform basic research anddevelopment in support of programs/projects; act as advisor/consultantin area of specialty.
Contribute to portions of published articles or presentations;prepare and write reports; draft and prepare scientific papers.
Provide technical direction to other research staff, engineeringassociates, technicians, and/or students, as needed.

Minimum Education andExperience

Bachelor’s degree and three years of relevant experience, orcombination of education and relevant experience.

Knowledge, Skills and Abilities: