Research Instructor

University of Colorado System; Aurora (CO); Hybrid; USD 90,000 - 105,000; Full time

Benefits offered by this job

Excellent benefits

Tuition benefit

ECO Pass

Job summary

University of Colorado Anschutz is seeking a Research Instructor to lead bioinformatic analyses for a translational biorepository. The role focuses on integrating PhIP-Seq, CYTOF, proteomics, and clinical data with WGS results, shaping data strategy, and building reusable infrastructure.

You will mentor 1–3 analysts, collaborate with clinicians and computational scientists, and contribute to publications and grant applications while advancing multi-omic analyses and reproducible research

Qualifications

• PhD in bioinformatics, computational biology, biostatistics, or data science.
• Four years of professional or research experience conducting bioinformatic analyses.
• Demonstrated experience with multi-omics data modalities.

Responsibilities

• Lead analysis and integration of PhIP-Seq, CYTOF, proteomics, clinical data, and WGS results.
• Develop analysis plans for biomarkers of disease subtype, prognosis, and treatment response.
• Design reproducible pipelines and data infrastructure for expanding biorepository.
• Provide technical leadership, code review, and mentorship to junior analysts.

Skills

Bioinformatics

R

Python

Omics data integration

Education

PhD in bioinformatics or related field

Tools

Nextflow

Snakemake

Docker/Singularity

HPC/Cloud computing

Git/VCS

Job description

University of Colorado Anschutz

Department: Ophthalmology

Job Title: Research Instructor

Position #00852899 – Requisition #41021

Job Summary:

This Lead Bioinformatician will provide scientific and technicalanalysis for a growing translational biorepository focused onidentifying biomarkers of disease subtype and treatment response.The position will lead the development and implementation ofreproducible analytical workflows integrating high-dimensionalimmunologic, proteomic, genomic, and clinical datasets.

Initial work will be heavily focused on the biorepository'smulti-omic data, including PhIP-Seq, high-dimensional cytometry,plasma proteomics, clinical phenotypes, and integration withwhole-genome sequencing results generated by collaboratinganalysts. This role will help shape the analytical scope andlong-term data strategy of the biorepository, establish reusabledata and computational infrastructure, and support its continuedgrowth in size and scientific scope.

The position will also support additional collaborative projectsinvolving single-cell RNA sequencing, spatial transcriptomics, andother emerging multi-omic technologies. The successful candidatewill work closely with clinical investigators, laboratoryscientists, statisticians, geneticists, and other computationalcollaborators to define research questions, develop analysis plans,interpret biological findings, and communicate results. Theposition will provide technical leadership, code review, training,and mentorship to approximately one to three analysts ortrainees.

Key Responsibilities

Multi-Omic Research and Analysis 65%

• Lead analysis and integration of PhIP-Seq, CYTOF,affinity-based and mass-spectrometry proteomics, clinical data, and externally analyzed WGS results.
• Develop analysis plans addressing biomarkers of disease subtype, prognosis, and treatment response.
• Apply and evaluate multi-omic methods including CCA, MOFA and related latent-factor models, WGCNA, pseudobulk analysis,cell-state and cell-cell communication analysis, and predictive modeling.
• Lead secondary projects involving single-cell RNA sequencingand spatial transcriptomics.
• Perform raw-data processing, quality assessment, normalization, statistical analysis, biological interpretation, and visualization.
• Work with investigators to refine research questions, assess feasibility, select appropriate methods, estimate timelines, and communicate analytical limitations.
• Prepare publication-quality figures and contribute to manuscripts, abstracts, presentations, and grant applications.
• Serve as a coauthor on collaborative work, with opportunities to lead analytically focused manuscripts.

Data Infrastructure, Reproducibility, and Governance25%

• Design a reusable analytical and data infrastructure that supports continued expansion of the biorepository.
• Develop, validate, document, and maintain reproducible computational pipelines using workflow-management systems.
• Work in high-performance computing and cloud-computing environments.
• Develop and maintain data dictionaries, metadata standards, sample identifiers, provenance records, analysis documentation, and quality-control procedures.
• Harmonize clinical, laboratory, and multi-omic datasets across projects and collection periods.
• Establish standards for code quality, versioning, documentation, archiving, and reproducible reporting.

Technical Leadership, Mentoring, and Collaboration 10%

• Provide technical guidance, code review, training, and mentorship to one to three junior analysts, trainees, or research staff.
• Teach best practices in bioinformatics, statistical analysis, reproducible research, data management, and scientific visualization.
• Promote consistent analytical standards across projects.
• Participate in project meetings and communicate findings toboth computational and non-computational collaborators.
• Help prioritize analytical requests and support effective management of multiple concurrent projects.

Approximately 90% of the role's initial work will support the biorepository, with the portfolio expected to broaden over thefirst two to three years.

Work Location:

Hybrid – this role is eligible for a hybrid schedule of 3 days perweek on campus and as needed for in-person meetings.

Why Join Us:

Our department's home to the Sue Anschutz Rodgers Eye Center on theAnschutz Medical Campus. This state-of-the-art facility is one ofthe largest eye centers in the country and serves not only patientsin the Rocky Mountain region but also patients all over theworld.

The technological innovations conceived and developed byDepartmental faculty have changed the practice of eye carethroughout the world. Our educational programs train the nextgeneration of leaders in ophthalmology. Our specialists havedeveloped national and international reputations for excellence inroutine and complex ophthalmic care. We have invested heavily intracking our clinical outcomes and we are proud that our cliniciansperform at the highest levels in their respective fields.

Why work for the University?

We have AMAZING benefits and offer exceptional amounts of holiday,vacation and sick leave! The University of Colorado offers anexcellent benefits package including:

• Medical: Multiple plan options
• Dental: Multiple plan options
• Additional Insurance: Disability, Life, Vision
• Retirement 401(a) Plan: Employer contributes 10% of your grosspay
• Paid Time Off: Accruals over the year (based on percentage oftime)
• Vacation Days: 22/year (maximum accrual 352 hours)
• Sick Days: 15/year (unlimited maximum accrual)
• Holiday Days: 11/year
• Tuition Benefit: Employees have access to this benefit on allCU campuses
• ECO Pass: Reduced rate RTD Bus and light rail service

There are many additional perks & programs with the CU Advantage .

Qualifications:

Minimum Qualifications:

Applicants must meet minimum qualifications at the time of hire.

• PhD in bioinformatics, computational biology, biostatistics, or data science..
• Four years of professional or research experience conducting bioinformatic or computational analyses, including substantial independent responsibility for study analysis and interpretation.
• Demonstrated experience with complex analyses involving multiple biological data modalities.
• Demonstrated proficiency in multiple coding languages, including R and Python.
• Experience developing reproducible bioinformatic workflows and using version control.
• Experience performing quality control, statistical analysis, visualization, and biological interpretation of high-dimensional biomedical data.
• Experience collaborating with both computational and non-computational investigators.
• Experience independently organizing work, managing timelines, and contributing to multiple concurrent research projects.

Preferred Qualifications:

• Five or more years of relevant bioinformatics or computational research experience.
• Experience leading collaborative projects.
• Demonstrated experience integrating three or more omics or high-dimensional data types.
• Experience analyzing the following:
  • single-cell RNA sequencing;
  • spatial transcriptomics;
  • affinity-based proteomics;
  • mass-spectrometry proteomics;
  • high-dimensional cytometry;
  • PhIP-Seq or other serologic assays;
  • germline genomic data;
  • longitudinal clinical or treatment-response data.
• Experience with CCA, MOFA or related latent-factor methods, WGCNA, pseudobulk analysis, cell-cell communication analysis, and predictive modeling.
• Experience with Nextflow, Snakemake, or comparable workflow-management systems.
• Experience using containers such as Docker, Singularity, or Apptainer.
• Experience with HPC and/or cloud-computing environments.
• Experience designing metadata standards, harmonizing data across studies, or developing reusable research data infrastructure.
• Publication record demonstrating substantive contributions to biomedical data analysis.
• Experience contributing analytical sections to grant applications.
• Experience training or mentoring analysts, students, or research staff.
• Experience in immunology, translational research, autoimmune or inflammatory disease, ophthalmology, or biomarker discovery.

Knowledge, Skills and Abilities:

• Advanced knowledge of statistical and computational principles relevant to multi-omic biomedical research.
• Ability to independently evaluate complex research questions and recommend rigorous analytical approaches.
• Ability to distinguish exploratory, confirmatory, and predictive analyses and communicate the limitations of each.
• Strong programming, data-management, troubleshooting, and scientific-visualization skills.
• Commitment to reproducibility, transparency, documentation, and code quality.
• Ability to translate complex analytical results for clinicians, laboratory scientists, trainees, and other stakeholders.
• Ability to work independently while contributing effectively within multidisciplinary teams.
• Strong organizational, project-management, and time-management skills.
• Ability to balance multiple projects, identify dependencies, communicate delays or risks, and establish realistic timelines.
• Ability to provide constructive technical feedback and mentorship without formal supervisory authority.
• Scientific curiosity and willingness to evaluate new analytical approaches as technologies and research questions evolve.

Anticipated Pay Range:

The starting salary range ( or hiring range ) for thisposition has been established as HIRING RANGE:

$90,000-105,000

The above salary range ( or hiring range ) represents theUniversity's good faith and reasonable estimate of the range ofpossible compensation at the time of posting. This position is noteligible for overtime compensation unless it is non-exempt.

Your total compensation goes beyond the number on your paycheck.The University of Colorado provides generous leave, health plansand retirement contributions that add to your bottom line.

Total Compensation Calculator: http://www.cu.edu/node/153125

Equal Employment Opportunity Statement:

The University of Colorado (CU) is an Equal Opportunity Employer and complies with all applicable federal, state, and local laws governing nondiscrimination in employment. We are committed to creating a workplace where all individuals are treated with respect and dignity, and we encourage individuals from all backgrounds to apply, including protected veterans and individuals with disabilities.

ADA Statement:

The University will provide reasonable accommodations to applicants with disabilities throughout the employment application process. To request an accommodation pursuant to the Americans with Disabilities Act, please contact the Human Resources ADA Coordinator at [e-mail].

Background Check Statement:

The University of Colorado Anschutz Medical Campus is dedicated to ensuring a safe and secure environment for our faculty, staff, students and visitors. To assist in achieving that goal, we conduct background investigations for all prospective employees.

Vaccination Statement:

CU Anschutz strongly encourages vaccination against the COVID-19 virus and other vaccine preventable diseases. If you work, visit, or volunteer in healthcare facilities or clinics operated by our affiliated hospital or clinical partners or by CU Anschutz, you will be required to comply with the vaccination and medical surveillance policies of the facilities or clinics where you work, visit, or volunteer, respectively. In addition, if you work in certain research areas or perform certain safety sensitive job duties, you must enroll in the occupational health medical surveillance program.