Remote Biomedical Knowledge Systems Engineer

Globalchannelmanagement; Marlborough (MA); Remote; USD 52,348 - 53,726; Part time

Job summary

A leading technological solutions provider is seeking a Remote Biomedical Knowledge Systems Engineer in Marlborough, Massachusetts. The role requires 3+ years of experience in software development and biomedical system administration, with knowledge in MarkLogic, MongoDB, AWS, and NLP technologies. You will manage complex data systems and provide support for biomedical informatics. This part-time position (20 hours weekly) offers competitive compensation between $38.00 and $39.00 per hour.

Qualifications

• 3+ years of dedicated experience in software development and biomedical systems.
• Extensive knowledge of MarkLogic and MongoDB document databases.
• Demonstrated proficiency in advanced AWS services.

Responsibilities

• Manage and evolve custom semantic scientific search platform.
• Contribute to FDA regulatory information systems.
• Ensure data migration between MarkLogic and MongoDB.

Skills

MarkLogic and MongoDB experience

AWS services proficiency

Data curation and management

NLP and GenAI expertise

Full-stack engineering

Knowledge of FDA regulatory standards

Education

Bachelor's degree in Computer Science or related discipline

Job description

Remote Biomedical Knowledge Systems Engineer

Location: Marlborough, Massachusetts, United States

Compensation: $38.00 - $39.00 (US Dollar)

About the job

Biomedical Knowledge Systems Engineer needs 3 years dedicated experience in software development and highly specialized biomedical system administration.

PART TIME: 20 hours weekly

• Mandatory extensive knowledge and hands-on experience with both MarkLogic and MongoDB document databases, including direct experience with complex data migration scenarios between these platforms
• Bachelors degree in Computer Science, Bioinformatics, or a related discipline
• Demonstrated proficiency in advanced AWS services (Secrets Manager, Elastic Beanstalk, EC2) for secure, compliant application deployment and management within regulated environments
• In-depth, practical experience with data curation, retrieval, and management using datasets and APIs from FDA, AACT, and clinicaltrials.gov—including expertise in regulatory data standards and integration techniques
• Proven expertise with NLM biomedical data infrastructures (including PubMed, PMC, and Gene Expression Omnibus), encompassing large-scale automated ingestion, normalization, and semantic integration of publication and experimental data
• Direct, production-level experience with NLP, GenAI, LLM agentic frameworks applied to real-world biomedical use-cases, demonstrating the ability to build custom pipelines for semantic search and knowledge graph construction
• Highly proficient in full-stack engineering, with significant track record in modern frontend frameworks (including vue.js or equivalent), backend API design, and cloud-based microservices architecture tailored to scientific workflows
• Prior stewardship of unique and custom-built biomedical information systems with complex, multi-sourced data pipelines
• Documented contributions to FDA regulatory information systems and prior collaborative work with scientific publication analytics
• Independently manage, maintain, and evolve our custom semantic scientific search platform, performing high-level refactoring, troubleshooting, and architectural upgrades as necessary
• Provide comprehensive administrative, operational, and development support for legacy biomedical informatics systems

Qualifications

• Same requirements as listed above for consistency (see responsibilities) – 3+ years in software development and biomedical systems, bachelor’s degree, and experience with MarkLogic/MongoDB, AWS, data curation and regulatory data standards, NLM data infrastructures, NLP/GenAI, full-stack engineering, and FDA-related work.