Principal Scientist, SOP & Workflow Automation Champion, AI for Drug Discovery (AIDD)

Genentech; San Francisco (CA); On-site; USD 201,000 - 374,000; Full time

Benefits offered by this job

Discretionary bonus

Job summary

Genentech is seeking a leadership-focused engineer to architect end-to-end AI-enabled drug discovery workflows. You will unify modular ML components with scalable data pipelines and production-grade interfaces.

You will partner with platform teams to implement workflows at scale, ensure reliability, and translate research models into reusable production components for scientists across gRED and pRED.

Qualifications

• PhD or equivalent with 8+ years building computational systems.
• Proven ability to design scalable workflow architectures and data pipelines.
• Experience integrating heterogeneous data sources and models at scale.
• Strong programming in Python and ML frameworks; familiarity with workflow tools.

Responsibilities

• Design computational workflow architecture enabling modular ML components at scale.
• Lead development and SOPs for model integration and data pipelines across gRED/pRED.
• Collaborate with platform engineering to implement workflows at scale and ensure reliability.

Skills

Python

ML frameworks

Workflow orchestration

Data pipelines

Software architecture

Education

PhD in Computer Science or related field

Tools

Nextflow

Snakemake

Airflow

PyTorch

TensorFlow

JAX

Job description

The Position

A healthier future. It’s what drives us to innovate. To continuously advance science and ensure everyone has access to the healthcare they need today and for generations to come. Creating a world where we all have more time with the people we love. That’s what makes us Roche.
Advances in AI, data, and computational sciences are transforming drug discovery and development. Roche’s Research and Early Development organisations at Genentech (gRED) and Pharma (pRED) have demonstrated how these technologies accelerate R&D, leveraging data and novel computational models to drive impact. Seamless data sharing and access to models across gRED and pRED are essential to maximising these opportunities. The new Computational Sciences Center of Excellence (CoE) is a strategic, unified group whose goal is to harness the transformative power of data and Artificial Intelligence (AI) to assist our scientists in both pRED and gRED to deliver more innovative and transformative medicines for patients worldwide.

The Opportunity

At Roche's AI for Drug Discovery (AIDD) group within the Computational Sciences Center of Excellence, we are architecting a vision for end-to-end computational drug discovery. Today, drug discovery workflows are fragmented—different models for different modalities, disconnected processes across teams, manual handoffs between discovery and development. We are building a unified, modular system where machine learning methods integrate seamlessly into executable, agentic workflows that empower scientists across our organization to discover better medicines faster.

In this role, you will:

• Design computational workflow architecture that operationalizes modular ML components into scalable, reproducible, and agentic-ready systems

• Lead the development and standardization of SOPs for model integration, data pipelines, and workflow execution across gRED and pRED

• Partner strategically with Roche's platform engineering teams to implement workflows at scale

• Architect data integration with Roche's centralized data infrastructure (DDC), ensuring seamless model-data-workflow loops

• Collaborate with the modeling team to translate research-stage models into production-ready components with clear interfaces, performance benchmarks, and failure modes

• Navigate complex stakeholder environments, including portfolio teams, platform organizations, and technology development groups, to align on standards and drive adoption

• Lead and mentor engineers and scientists on workflow design, automation best practices, and computational architecture

Who you are

Technical Foundation

• PhD in Computer Science, Computational Biology, Bioinformatics, or related field, or equivalent advanced experience (8+ years building computational systems)

• Deep expertise in workflow orchestration, data pipeline design, and software architecture (not just machine learning)

• Proven experience designing systems that integrate heterogeneous data sources, models, and processes at scale

• Strong proficiency in Python and modern ML frameworks (PyTorch, TensorFlow, JAX); familiarity with workflow tools (Nextflow, Snakemake, Airflow, or similar)

• Understanding of software engineering practices: version control, testing, documentation, CI/CD pipelines

Experience in Life Sciences / Drug Discovery

• Demonstrated experience working at the intersection of computational methods and experimental biology

• Understanding of drug discovery workflows: what scientists actually need, where handoffs break down, how to design for usability

• Track record of translating research code into production systems that real teams use

• Experience working across technical and non-technical stakeholders (biology, chemistry, engineering)

Leadership & Collaboration

• Proven ability to lead complex, cross-functional initiatives involving multiple teams and organizations

• Track record of driving adoption of new standards, tools, or processes in larger organizations

• Strong communication skills: can explain complex technical concepts to diverse audiences and build consensus

• First-author publications or equivalent evidence of research contributions

Strategic Thinking

• You see the gap between "research works in a paper" and "research works at scale in an organization"

• You understand how to design systems for reliability, debuggability, and adoption

• You can balance scientific rigor with pragmatic engineering constraints

Relocation benefits are NOT available for this job posting

The expected salary range for this position, based on the primary location of California, is $201,300 - 373,800. Actual pay will be determined based on experience, qualifications, geographic location, and other job-related factors permitted by law. A discretionary annual bonus may be available based on individual and Company performance. This position also qualifies for the benefits detailed at the link provided below.

Benefits

#ComputationCoE

#tech4lifeComputationalScience

#tech4lifeAI

Genentech is an equal opportunity employer. It is our policy and practice to employ, promote, and otherwise treat any and all employees and applicants on the basis of merit, qualifications, and competence. The company's policy prohibits unlawful discrimination, including but not limited to, discrimination on the basis of Protected Veteran status, individuals with disabilities status, and consistent with all federal, state, or local laws.

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